View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_59 (Length: 212)
Name: NF11833_low_59
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 2243260 - 2243082
Alignment:
| Q |
15 |
cagagagatatgtgagtatacaatattccttatccttttgttttgaagcattatgcacttgaatattctacatcaatgtcatggttctacaaagtactac |
114 |
Q |
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| T |
2243260 |
cagagagctatgtgagtatacaatattccttatcctttt-ttttgaagcattatgcacttgaatattctacatcaatgtcatggttctacaaagtactac |
2243162 |
T |
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| Q |
115 |
tactagatatacttattaatttcaattttgaatgtgttctttattgtggtgcattagagggatactgtccaagctgcatc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243161 |
tactagatatacttattaatttcaattttgaatgtgttctttattgtggtgcattagagggatactgtccaagctgcatc |
2243082 |
T |
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