View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11833_low_7 (Length: 465)
Name: NF11833_low_7
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 45399757 - 45399612
Alignment:
| Q |
157 |
ccaattgcaagaacacgaaaattaaaagcacaagaaatcaagggcaatccaacccagaaattaaacacagcaatggtttaaccctcttctcataaaaccc |
256 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
45399757 |
ccaattgcaagagcacgaaaattaaaggcacaagaaatcaagggcagtccaacccagaaattaaacacaatagtggtttaaccctcttttcataaaaccc |
45399658 |
T |
|
| Q |
257 |
atgaactttaacccagaaaaa-cagtggcttaaaccacattttccc |
301 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
45399657 |
atgaactttaacccataaaaaggagtggcttaaatcacattttccc |
45399612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 2976016 - 2975928
Alignment:
| Q |
16 |
aatattgacaacatgggagacaaactaaatgaagatggggtttctttttgaaaatctctgaaacaggaacacaaattgatcagtgcctt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||||| |
|
|
| T |
2976016 |
aatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgaaacgggaacacaaatttatcaatgcctt |
2975928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 18366567 - 18366655
Alignment:
| Q |
16 |
aatattgacaacatgggagacaaactaaatgaagatggggtttctttttgaaaatctctgaaacaggaacacaaattgatcagtgcctt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
18366567 |
aatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaatttatcaatgcctt |
18366655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 18371831 - 18371919
Alignment:
| Q |
16 |
aatattgacaacatgggagacaaactaaatgaagatggggtttctttttgaaaatctctgaaacaggaacacaaattgatcagtgcctt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
18371831 |
aatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaatttatcaatgcctt |
18371919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 18376121 - 18376209
Alignment:
| Q |
16 |
aatattgacaacatgggagacaaactaaatgaagatggggtttctttttgaaaatctctgaaacaggaacacaaattgatcagtgcctt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
18376121 |
aatattgacaacctgggagacaaactaaatgaagatggggtttctttttgaaaatctccgagacaggaacacaaatttatcaatgcctt |
18376209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University