View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_high_10 (Length: 433)
Name: NF11834_high_10
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 10254947 - 10255355
Alignment:
| Q |
16 |
acaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254947 |
acaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgt |
10255046 |
T |
|
| Q |
116 |
tttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255047 |
tttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggttt |
10255146 |
T |
|
| Q |
216 |
agccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255147 |
agccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaa |
10255246 |
T |
|
| Q |
316 |
acaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255247 |
acaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacg |
10255346 |
T |
|
| Q |
416 |
gtcctatgc |
424 |
Q |
| |
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||||||||| |
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| T |
10255347 |
gtcctatgc |
10255355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 10239656 - 10239256
Alignment:
| Q |
18 |
aatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttt |
117 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
10239656 |
aatcacaaacggaaaagccacactatgtagccgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttt |
10239557 |
T |
|
| Q |
118 |
tctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggtttag |
217 |
Q |
| |
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|||||||||||||||||||| | || || |||||||| || || | | ||||||||| || |||| || || ||||| |||||||||||| || |
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| T |
10239556 |
tctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgtagcacgtgtgttaactggtcagtataatccaattaacggcattggattga |
10239457 |
T |
|
| Q |
218 |
ccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaaac |
317 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
10239456 |
tcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttccttatgaaatcaaagttacaccaaacggtgatatccaaac |
10239357 |
T |
|
| Q |
318 |
aattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacggt |
417 |
Q |
| |
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||| |||||||||||||||||||| ||||||| ||||| |||||| || ||||| ||||||||| ||||||||||||| ||| |||| ||| |||||| |
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|
| T |
10239356 |
aataggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattgactccgacacaggtgaatgtttcgcttaccgctacggt |
10239257 |
T |
|
| Q |
418 |
c |
418 |
Q |
| |
|
| |
|
|
| T |
10239256 |
c |
10239256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 10230878 - 10230475
Alignment:
| Q |
16 |
acaatctcaaacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgt |
115 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||| || |||| ||||| |||||||| |||||| |||||||| ||||||||||||||||||||| |
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|
| T |
10230878 |
acaatctcaaacgggaaagccacactatgtagccgttatgtaaaaacctacaagtacaaaattgaaaacaaagctggtcaccaacttatcccaaacgtgt |
10230779 |
T |
|
| Q |
116 |
tttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgcagcacgtgtcatatctggacaatacaatccttctaacggcattggttt |
215 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||| || || | |||||| || || | || || || || || |||||||||||||| || |
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|
| T |
10230778 |
tttctggtttcaactcgcttattgctttagcggcacgtggatccgtggttgtagcacgggtgttaaccggtcagtataacccatctaacggcattggatt |
10230679 |
T |
|
| Q |
216 |
agccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgccaaacggtgatatccaa |
315 |
Q |
| |
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| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || || ||||||||||| |||||| |
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| T |
10230678 |
ggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatcagatcttccttatgaagtcaaactaacaccaaacggtgacatccaa |
10230579 |
T |
|
| Q |
316 |
acaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggtgaaacttttgctttccgttacg |
415 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||| ||||||||||| || ||||| ||||| ||| |||||| ||||| ||| ||||||||||| | |
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| T |
10230578 |
acaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcatcctaaaatagactctgacacaagtgaatgtttcgctttccgttatg |
10230479 |
T |
|
| Q |
416 |
gtcc |
419 |
Q |
| |
|
|||| |
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|
| T |
10230478 |
gtcc |
10230475 |
T |
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