View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11834_high_17 (Length: 250)

Name: NF11834_high_17
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11834_high_17
NF11834_high_17
[»] chr6 (13 HSPs)
chr6 (1-234)||(4470926-4471159)
chr6 (1-241)||(4462212-4462452)
chr6 (1-223)||(4481885-4482107)
chr6 (1-235)||(4489083-4489315)
chr6 (1-190)||(4503179-4503368)
chr6 (1-110)||(4575588-4575697)
chr6 (1-110)||(4561795-4561904)
chr6 (1-190)||(3173056-3173245)
chr6 (1-107)||(4623443-4623549)
chr6 (1-114)||(4265943-4266056)
chr6 (1-48)||(4581209-4581256)
chr6 (11-48)||(4558320-4558357)
chr6 (7-36)||(4599370-4599399)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-110)||(3408-3517)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-65)||(2340-2404)
[»] scaffold0475 (1 HSPs)
scaffold0475 (1-63)||(2001-2063)
[»] chr5 (1 HSPs)
chr5 (1-114)||(24104220-24104337)
[»] chr8 (1 HSPs)
chr8 (11-48)||(16685190-16685227)
[»] chr7 (1 HSPs)
chr7 (9-126)||(3087862-3087979)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4471159 - 4470926
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  4471159 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtagatgctgctgaagaacgtgcactcccaatcg 4471060  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4471059 ttctcttttctccggtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttc 4470960  T
Q  201 gttccctttttcttcctatgagaggtttgttgtg 234  Q
    ||||||||||||||| |||||||| |||||||||    
T  4470959 gttccctttttcttcttatgagagttttgttgtg 4470926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4462452 - 4462212
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  4462452 tctgccactgccgatcttatccctccggttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatcg 4462353  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttc 200  Q
    |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4462352 ttctcttttccccggtcagtgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttt 4462253  T
Q  201 gttccctttttcttcctatgagaggtttgttgtgtctgtgc 241  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  4462252 gttccctttttcttcctaagagaggtttgttgtgtctgtgc 4462212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4482107 - 4481885
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||||||||||||| ||||||| ||||| |||||| || |||||||||| ||||||||||||||||| ||| | || ||||||| |||||||||||| |    
T  4482107 tctgccactgctggtattatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaattg 4482008  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttc 200  Q
    |||||||||| || ||||| ||||||| || |||| ||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||| |      
T  4482007 ttctcttttccccggtcagtgcatgttacttactctctacttctttgattcctaaattgtttcagaatggtgtgctaccactcaaaggtatatcatttat 4481908  T
Q  201 gttccctttttcttcctatgaga 223  Q
    |||| ||||||||| ||| ||||    
T  4481907 gttctctttttctttctaagaga 4481885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4489083 - 4489315
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||| |||||||||||||||||||||||||||||| || ||||||||||  | ||| |||||||||| ||| | |||||||||| |||||||||||| |    
T  4489083 tctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctgaagaacatgcactcccaattg 4489182  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggtatatcatcttc 200  Q
    |||||||||| |||   || |||| || ||    | |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |      
T  4489183 ttctcttttccccatgtagtgcatcttacttctactctacttttcacattactaaattgtttcagaatggtgtgctaccactcaaaggta-atcat-tat 4489280  T
Q  201 gttccctttttcttcctatgagaggtttgttgtgt 235  Q
    |||||||||||| ||||| | ||||| ||||||||    
T  4489281 gttccctttttcatcctaagggaggtatgttgtgt 4489315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 4503179 - 4503368
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||  ||||||||||| ||||  || | |||||||||| | |||||||||| |    
T  4503179 tctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccatttccagtatatgctgctgaagaacatacactcccaattg 4503278  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggta 190  Q
    ||||| |||| |||   || |||| || ||    | |||||| ||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  4503279 ttctcgtttccccatgtagtgcatcttacttctactctacttttcacattgctaaattgtttcacaatagtatgctaccactcaaaggta 4503368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4575697 - 4575588
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||||||||||||||| ||| | |||||||||| ||| |||||||| |    
T  4575697 tctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgctgctgaagaacatgccctcccaattg 4575598  T
Q  101 ttctcttttc 110  Q
    |||| |||||    
T  4575597 ttcttttttc 4575588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4561904 - 4561795
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||||||||||||||| | | | |||||||||| |||||||||| | |    
T  4561904 tctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagctgctgctgaagaacatgcactcccagttg 4561805  T
Q  101 ttctcttttc 110  Q
    |||| |||||    
T  4561804 ttcttttttc 4561795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 3173245 - 3173056
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||| |||||||||||||| ||||||||||||||| |  |||| ||||| || |||||||||||||| |||   |||||||||| ||| |||||||| |    
T  3173245 tctgcaactgctggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgttgctgaagaacatgctctcccaattg 3173146  T
Q  101 ttctcttttctccagtcagcgcatgttgctcactcactacttctcacattcctaaattgtttcagaatggtgtgctgccactcaaaggta 190  Q
    |||| ||||| ||    || ||||||| ||   |  ||  || ||| |||||||||||||||||||||||| | || |||||||||||||    
T  3173145 ttctattttcgccgtgtagtgcatgtttcttcttggctggttttcatattcctaaattgtttcagaatggtctactaccactcaaaggta 3173056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4623549 - 4623443
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    |||||||||||||||||| | || |||||||||||| || |||| |||||||||||| |||||||| |  |  | |||||||| | |||||||||||| |    
T  4623549 tctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcactcccaattg 4623450  T
Q  101 ttctctt 107  Q
    || ||||    
T  4623449 ttttctt 4623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4265943 - 4266056
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    ||||||| || |||| |||| || ||| |||||||| |  |||| |||||||||||||| |||||| | ||| | || ||||||| |||||||||||||     
T  4265943 tctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgctgcggaagaacatgcactcccaatcc 4266042  T
Q  101 ttctcttttctcca 114  Q
    || |||||||||||    
T  4266043 ttttcttttctcca 4266056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4581256 - 4581209
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgat 48  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  4581256 tctgccacttctggtcttgtccctccagttacttgcatagtttctgat 4581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 4558357 - 4558320
Alignment:
Q  11 ctggtcttatccctccagttacttgcataatttctgat 48  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  4558357 ctggtcttgtccctccagttacttgcatagtttctgat 4558320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 4599399 - 4599370
Alignment:
Q  7 actgctggtcttatccctccagttacttgc 36  Q
    ||||||||||||||||||||||||||||||    
T  4599399 actgctggtcttatccctccagttacttgc 4599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 3408 - 3517
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcg 100  Q
    |||||||||||||||||| | || | ||||||||||||| |  ||||||||||||||||||||||  |  |  | |||||||||| |||||||||||| |    
T  3408 tctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcactcccaattg 3507  T
Q  101 ttctcttttc 110  Q
    ||||||||||    
T  3508 ttctcttttc 3517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2340 - 2404
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttac 65  Q
    ||||||| | ||||||||||||||||||| ||| || || ||||||||||||||||| |||||||    
T  2340 tctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttac 2404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2063 - 2001
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccattt 63  Q
    ||||||| | ||||||||||||||||||| ||| || || ||||||||||||||||| |||||    
T  2063 tctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcattt 2001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24104337 - 24104220
Alignment:
Q  1 tctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacag----tggataccgctgaagaacgtgcactccca 96  Q
    ||||||| || |||| |||| || ||| |||||||| || |||| ||||||||||||||||||||||    | ||| | | |||||||| ||||||||||    
T  24104337 tctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagttgatcgatgctgttgaagaacatgcactccca 24104238  T
Q  97 atcgttctcttttctcca 114  Q
    ||  || |||||||||||    
T  24104237 attcttttcttttctcca 24104220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 16685190 - 16685227
Alignment:
Q  11 ctggtcttatccctccagttacttgcataatttctgat 48  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  16685190 ctggtcttgtccctccagttacttgcatagtttctgat 16685227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 3087979 - 3087862
Alignment:
Q  9 tgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtggataccgctgaagaacgtgcactcccaatcgttctcttt 108  Q
    |||||||||||| || |||||||||||| || |  |||||| |||||||||||||||  |  |    ||||||||   ||||||||||||| ||||||||    
T  3087979 tgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttt 3087880  T
Q  109 tctccagtcagcgcatgt 126  Q
    || |||| ||| ||||||    
T  3087879 tcaccagccagtgcatgt 3087862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University