View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11834_high_20 (Length: 243)

Name: NF11834_high_20
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11834_high_20
NF11834_high_20
[»] chr3 (2 HSPs)
chr3 (18-231)||(35521417-35521644)
chr3 (19-214)||(35516733-35516943)
[»] chr6 (6 HSPs)
chr6 (17-214)||(33769091-33769301)
chr6 (107-215)||(24236004-24236118)
chr6 (24-94)||(33765311-33765381)
chr6 (139-203)||(33765233-33765297)
chr6 (24-65)||(24235962-24236003)
chr6 (40-68)||(30724027-30724055)
[»] scaffold0231 (2 HSPs)
scaffold0231 (107-215)||(2679-2793)
scaffold0231 (24-65)||(2637-2678)
[»] chr8 (1 HSPs)
chr8 (20-214)||(12471930-12472137)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 35521417 - 35521644
Alignment:
Q  18 atattgaatatcagagaaagagg-aattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagaaagagga-------attgaca 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |  |       ||  |||    
T  35521417 atattgaatatcagagaaagagggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagagctattattgatttatataca 35521516  T
Q  110 aagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatcttt 203  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35521517 aagttataaaactattgaagtactgtaactgatgtaaaactaataactagggaagaactaaccgacctctctactataaatgagataaattagcatcttt 35521616  T
Q  204 attaggtaataacgagtttacacgccta 231  Q
    ||||||||||||||||||||||||||||    
T  35521617 attaggtaataacgagtttacacgccta 35521644  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 35516733 - 35516943
Alignment:
Q  19 tattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgacaaa 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |  ||   ||  |||||    
T  35516733 tattgaatatcagagaaaggggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagagctgctattgatttatatacaaa 35516832  T
Q  112 gttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactata--aatgagataaattagcatcttt 203  Q
    |||||||||||||||||||||| ||||      ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  35516833 gttataaaactattgaagtactataactgatgtaaaactaataactagggaagaactaacagacttctctactataataatgagataaattagcatcttt 35516932  T
Q  204 attaggtaata 214  Q
    ||||| |||||    
T  35516933 attagataata 35516943  T

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Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 33769301 - 33769091
Alignment:
Q  17 aatattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |  ||   ||  |||    
T  33769301 aatattgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagagagctgctattgatttatataca 33769202  T
Q  110 aagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatcttt 203  Q
    |||||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33769201 aagttataaaactattgaagtactgtaactgatgtaaaactaataactaggggagaactaacagacttctctactataaatgagataaattagcatcttt 33769102  T
Q  204 attaggtaata 214  Q
    |||||||||||    
T  33769101 attaggtaata 33769091  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 24236004 - 24236118
Alignment:
Q  107 acaaagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatc 200  Q
    ||||||||||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24236004 acaaagttataaaactattgaagtattgtaactcatgtaaaactaataactagggaagaactaacagacttctctactataaatgagataaattagcatc 24236103  T
Q  201 tttattaggtaataa 215  Q
    |||||||||||||||    
T  24236104 tttattaggtaataa 24236118  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 33765381 - 33765311
Alignment:
Q  24 aatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag 94  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33765381 aatatcagggaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag 33765311  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 33765297 - 33765233
Alignment:
Q  139 aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatcttt 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33765297 aaaactaataactagggaagaactaacagacttctctactataaatgagataaattagcatcttt 33765233  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24235962 - 24236003
Alignment:
Q  24 aatatcagagaaagaggaattgagatgtaattctcattttat 65  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  24235962 aatatcatagaaagaggaattgagatgtaattctcattttat 24236003  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 30724027 - 30724055
Alignment:
Q  40 gaattgagatgtaattctcattttattgt 68  Q
    |||||||||||||||||||||||||||||    
T  30724027 gaattgagatgtaattctcattttattgt 30724055  T

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Target: scaffold0231 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 2679 - 2793
Alignment:
Q  107 acaaagttataaaactattgaagtactgtaac------aaaactaataactagggaagaactaacagacctctctactataaatgagataaattagcatc 200  Q
    ||||||||||||||||||||||||||| ||||      |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  2679 acaaagttataaaactattgaagtactataactgatgtaaaactaacaactagggaagaactaacagacttctctactataaatgggataaattagcatc 2778  T
Q  201 tttattaggtaataa 215  Q
    |||||||||||||||    
T  2779 tttattaggtaataa 2793  T

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Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 2637 - 2678
Alignment:
Q  24 aatatcagagaaagaggaattgagatgtaattctcattttat 65  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  2637 aatatcatagaaagaggaattgagatgtaattctcattttat 2678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 12471930 - 12472137
Alignment:
Q  20 attgaatatcagagaaagaggaattgagatgtaattctcattttattgttgtgtaaaaatctgatttacatagag-------aaagaggaattgacaaag 112  Q
    ||||||| || |||||| | ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||       |  ||   ||  ||||||    
T  12471930 attgaatgtctgagaaataagaaatgagatgtaattcttattttattgttatgtaaaaatctgatttacatagagagctgctattgatttatatacaaag 12472029  T
Q  113 ttataaaactattgaagtactgtaac-----aaaactaataactagggaagaa-ctaacagacctctctactataaatgagataaattagcatctttatt 206  Q
    || |||||||||||||||| ||||||      ||||||||||||||| || || ||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  12472030 ttctaaaactattgaagtattgtaactgacataaactaataactaggaaaaaagctaactgatttctctactataaatgagataaattagcatatttatt 12472129  T
Q  207 aggtaata 214  Q
    | ||||||    
T  12472130 aagtaata 12472137  T

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