View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_high_3 (Length: 775)
Name: NF11834_high_3
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 683; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 1 - 758
Target Start/End: Complemental strand, 24385996 - 24385238
Alignment:
| Q |
1 |
atgtgtttgtgcttgttgagttcttggttgatacaaagtgttaccacaacaacatgagatcaaagtgttccactaatataaagtctgagcaaataaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24385996 |
atgtgtttgtgcttgttgagttcttggttgatacaaagtgttaccacaacaacatgagatcaaagtgttccactaatataaagtctgagcaaataaaata |
24385897 |
T |
|
| Q |
101 |
aannnnnnnnnnnnnnnnnnnn-atcaatctatagatctataaacaaaatgaatctgttatctgtataggtttacttatatgtttcacatgtttatcagc |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24385896 |
aattttttttctttctttctttcatcaatctatagatctataaacaaaatgaatctgttatctgtataggtttacttatatgtttcacatgtttatcagc |
24385797 |
T |
|
| Q |
200 |
ttgtttctcaattccacttttcactatatatgttatttctttttgcatttcaaattggaacaatacatcatcttagcaaatggaagataattacatacag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24385796 |
ttgtttctcaattccacttttcactatatatgttatttctttttgcatttcaaattggaacaatacatcatcttagcaaatggaagataattacatacag |
24385697 |
T |
|
| Q |
300 |
agtcatgaatattcaggagagaaaaagttcccttttgagagaatcatctagcaaataagtaattaactgaaaaacaaatctattgaattcagagattgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24385696 |
agtcatgaatattcaggagagaaaaagttcccttttgagagaatcatctagcaaataagtaattaactgaaaaacaaatctattgaattcagagattgtc |
24385597 |
T |
|
| Q |
400 |
aaactgttaacagttgataattattcaacaatacaataaccaaagagaaacacattacttgacacaaactcaaactagataatgctaaacaaagagtaac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24385596 |
aaactgttaacagttgataattattcaacaatacaataaccaaagagaaacacattacttgacacaaactcaaactagataatgctaaacaaagagtaac |
24385497 |
T |
|
| Q |
500 |
ttattactttccattcgtcgaaaccaaactttcaatataattattcagaaaaacccacctttttcttttggtagtagttataactcgctccaccttatta |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24385496 |
ttattactttccattcgtcgaaaccaaactttcaatataattattcagaaaaacccacctttttcttttggtactagttataactcgctccaccttatta |
24385397 |
T |
|
| Q |
600 |
gtcctccaattatagagaattagttgtcgtaatacagggatttccaatatcaatgcatcaccattctcagaataaaacaatggcaacaaggatatatatg |
699 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24385396 |
gtcctccaattatagagaattagttgtcgtaatacagggatttccaatatcaatgcatcaccattctcagaataaaacaatggcaacaacgatatatatg |
24385297 |
T |
|
| Q |
700 |
aagttttaaatatttgaagattatgatgactaattttaagaaatcgactccaagacttt |
758 |
Q |
| |
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| T |
24385296 |
aagttttaaatatttgaagattatgatgactaattttaagaaatcgactccaagacttt |
24385238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 447 - 627
Target Start/End: Complemental strand, 24391788 - 24391615
Alignment:
| Q |
447 |
aaacacattacttgacacaaactcaaactagataatgctaaacaaagagtaacttattactttccattcgtcgaaaccaaactttcaatataattattca |
546 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| ||||||| || || |||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
24391788 |
aaacacattacttgtcacgaacacaaacaagataatccttaa----gagtaactta---ctttccattcgtcgaaaccaaactttcaacataattattgc |
24391696 |
T |
|
| Q |
547 |
gaaaaacccacctttttcttttggtagtagttataactcgctccaccttattagtcctccaattatagagaattagttgtc |
627 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24391695 |
gaaaaacccacctttttcttttggtagtagtcataattcgctccaccttattagtcctccaattgtagagaattagttgtc |
24391615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 24391895 - 24391824
Alignment:
| Q |
369 |
aaaaacaaatctattgaattcagagattgtcaaactgttaacagttgataattattcaacaatacaataacca |
441 |
Q |
| |
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||||||||||||||| | ||||||||||||| ||||| |||| | |||||| |||||||||| ||||||||| |
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| T |
24391895 |
aaaaacaaatctattcatttcagagattgtc-aactggtaacgatagataatcattcaacaatgcaataacca |
24391824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 660832 - 660878
Alignment:
| Q |
710 |
tatttgaagattatgatgactaattttaagaaatcgactccaagact |
756 |
Q |
| |
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||||||||||||||||| |||||||||||| ||| || ||||||||| |
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| T |
660832 |
tatttgaagattatgataactaattttaaggaattgagtccaagact |
660878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8774727 - 8774669
Alignment:
| Q |
1 |
atgtgtttgtgcttgttgagttcttggttgatacaaagtgttaccacaacaacatgaga |
59 |
Q |
| |
|
|||||||| |||||||| || |||||||| || |||| ||||||||||||||||||||| |
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|
| T |
8774727 |
atgtgtttttgcttgttaagctcttggttaatgcaaaatgttaccacaacaacatgaga |
8774669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 11970967 - 11971013
Alignment:
| Q |
710 |
tatttgaagattatgatgactaattttaagaaatcgactccaagact |
756 |
Q |
| |
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||||||||||||||||| ||||||| |||||||| || ||||||||| |
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| T |
11970967 |
tatttgaagattatgataactaattctaagaaattgagtccaagact |
11971013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 756
Target Start/End: Original strand, 11981669 - 11981714
Alignment:
| Q |
711 |
atttgaagattatgatgactaattttaagaaatcgactccaagact |
756 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||||| |||| |||| |
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| T |
11981669 |
atttgaagattaagataactaattttaagaaatcgagtccaggact |
11981714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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