View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_high_4 (Length: 751)
Name: NF11834_high_4
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 6607323 - 6607142
Alignment:
| Q |
1 |
taagatgaaaatcgtcctaatgtaagcctc-aattcaccaactaaaataaaagccttaatacaacaatcaagtta----catacaaaatcacaccaccga |
95 |
Q |
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| T |
6607323 |
taagataaaaatcgtcctaatgtaagcctctaacacaccaaccaaaataaaagccttaatacaacaatcaagttaattacatacaaaatcaaaccaccga |
6607224 |
T |
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| Q |
96 |
tctccataggatattaggcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataata |
177 |
Q |
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| T |
6607223 |
tctccttaggatattaagcatttgcagcaatgatgaaagaaatagtagcatgccaaaatctgttccaagcatcaaaataata |
6607142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 7314231 - 7314113
Alignment:
| Q |
355 |
aatgaatgcttaaaatgtgaatgaagctattacttttctatatcaaatgaactatatgagtttagctcagattaaaaatattttaggctgaaacaaaggt |
454 |
Q |
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| T |
7314231 |
aatgaatgcttaaaatgtgaatgaaactattacttttctatatcaaatgaacaatataaatttagctcagaatgaaaatattttaggctgcaacaaaggt |
7314132 |
T |
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| Q |
455 |
ttcaacaaactatgctata |
473 |
Q |
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| T |
7314131 |
ttcaacaaaatatgctata |
7314113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 513 - 683
Target Start/End: Complemental strand, 1380880 - 1380709
Alignment:
| Q |
513 |
taatgcatttccataaatagtacttcta--cggtgaaatgggggaaaa---tactaataaaaggaaacaaaacatgttaattttaaccactagtaatgtc |
607 |
Q |
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| T |
1380880 |
taatgcatttctagaaatagtacttgtgtccagtgaaatgggggaaaaggatactaatagaaggaaacaaaacatattaatcttaaccacttctatttac |
1380781 |
T |
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| Q |
608 |
cttcatgtgcatactaagccaaaccatacacactgcgaacaaacaaacttaatcttatccaacattgattctattt |
683 |
Q |
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| T |
1380780 |
ctccttgtgcatactaagtcaaaccatacacact----cccaacaaactcaatcttatccaactttgattctattt |
1380709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 543 - 683
Target Start/End: Complemental strand, 7314082 - 7313943
Alignment:
| Q |
543 |
gtgaaatgggggaaaa---tactaataaaaggaaacaaaacatgttaattttaaccactagtaatgtccttcatgtgcatactaagccaaaccatacaca |
639 |
Q |
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| T |
7314082 |
gtgaaatgggggaaaaggatactaatagaaggaaacacgacatattaatcttagccacttctatttacctccatgtgcatactaagtcaaaccatacaca |
7313983 |
T |
|
| Q |
640 |
ctgcgaacaaacaaacttaatcttatccaacattgattctattt |
683 |
Q |
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| T |
7313982 |
ct----cccaacaaactcaatcttatccaactttgattctattt |
7313943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 11388941 - 11389015
Alignment:
| Q |
113 |
gcatttgcagcaatgatgaaagcaatggtagcatgtcaaaatctgtcgcaagcatcaaaataatagatcacaaaa |
187 |
Q |
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| T |
11388941 |
gcatttgcagcaatgatgaaagaaacagtagcatgccaaaatttatcataagcatcaaattaatagatcacaaaa |
11389015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 714
Target Start/End: Complemental strand, 43061361 - 43061320
Alignment:
| Q |
673 |
tgattctatttactttgctgcaattttccaatatcaacaaaa |
714 |
Q |
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| T |
43061361 |
tgattgtatttactttgctgcaattttccaacatcaacaaaa |
43061320 |
T |
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