View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_1 (Length: 817)
Name: NF11834_low_1
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 132 - 811
Target Start/End: Complemental strand, 42898846 - 42898155
Alignment:
| Q |
132 |
agaggcctcttcatattttttaagtgcttctgaaagagcttgtgcctctttttcgtttgccctacaaaacataaaatagtcatctacaaatgataagtgc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
42898846 |
agaggcctcttcatattttttaagtgcttctgaaagagcttgtgcctctttttcgtttgccctacaaaacaaaaaacagtcatctacaaataataagtgc |
42898747 |
T |
|
| Q |
232 |
gtcaggagtggg-ctcctcaacacactttaataccatggatttcccctcgggcttctaacttttcgagcaacactgagaggcattccgcacaaataataa |
330 |
Q |
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|||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |
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| T |
42898746 |
gtcaggagtggggctcctcgacacactttgataccatggatttcccctcgggcttctaactttttgagcaagactgagaggccttccgcacaaataataa |
42898647 |
T |
|
| Q |
331 |
acaaagtatggggatgacggtttcccttgtcgtaagcctctttcaggatatcataaaccaatacccttcccattttcacccatttctcgtcgaaatccat |
430 |
Q |
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|||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42898646 |
acaaagtatggggacgacggtttcccttgtcgtatgtctctttcaggatatcgtaaaccaatacccttcccattttcacccatttctcgtcaaaatccat |
42898547 |
T |
|
| Q |
431 |
cttcctcatcatacattggacaaaactatagtttactcaa-------------taatatctatcttcaatgctacttcccccttcttacgtttggacttc |
517 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| || |
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| T |
42898546 |
cttcctcatcatacattggacaaaactccagtttactcaatcatatgctttgttaatatctatcttcagtgctacttcccccttcttacatttgga-ttt |
42898448 |
T |
|
| Q |
518 |
ccccttcatgtgatgtaaaatttcagatgctaccaaaacattatcaagaatagatctattttccacaaaagttgattgttcttgtgaaatgcattttggt |
617 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42898447 |
gcgtttcatgtgatgtaaaatttcagatgctaccaaaa-attatcaagaatagatctattttccacaaaagctgattgttcttgtgaaatgcattttggt |
42898349 |
T |
|
| Q |
618 |
aataacctctcgagtctattagctaacaccttgatatgattttgtaaaggatgttgcatagtgaaataaggcgtaaatccctcctagtttctcgattatc |
717 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
42898348 |
aataacctctcgagtctatcagctaacaccttgatatgattttgtaaaggatgttgcatagtgaaatagggcgtaaatccctcatagtttctcgattatc |
42898249 |
T |
|
| Q |
718 |
cttctttggaattaagactatttatttccactagtttttcagggaactcatctgtattcagccacaagacttaagtatgaaaaatctctgctcc |
811 |
Q |
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| T |
42898248 |
cttctttggaattaagactatttatttccactagttttttggagaactcatctgtattcagccacaagactccagtatgaaaaatctctgctcc |
42898155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 42898960 - 42898915
Alignment:
| Q |
18 |
atgatgaacgtcgttcgaaattgcataattatgtgtagcccaaatg |
63 |
Q |
| |
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| T |
42898960 |
atgatgaacgtcattcgaaatcgcataattacgtgtagtccaaatg |
42898915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 474 - 808
Target Start/End: Original strand, 15163221 - 15163557
Alignment:
| Q |
474 |
tatctatcttcaatgctacttcccccttcttacgtttggacttcccccttcatgtgatgtaaaatttcagatgctaccaaaacattatcaagaatagatc |
573 |
Q |
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||||||||||| | ||| ||||||||||||| | ||||||||| | | ||||||||||||||||||| ||| || |||||||||||||| | ||||||| |
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| T |
15163221 |
tatctatcttcgacgctgcttcccccttcttccctttggacttgcac-ttcatgtgatgtaaaattttagacgccaccaaaacattatccaaaatagata |
15163319 |
T |
|
| Q |
574 |
tattttccacaaaagttgattgttcttgtgaaatgcattttggtaataacctctcgagtctattagctaacac-cttgatatgattttgtaaaggatgtt |
672 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||| || |
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| T |
15163320 |
tattttccacaaaagttaagtgttcttgtgaaatgcattttggcaataatctctcgagtctattacctaacacttttgatatgattttgtaaaggaattt |
15163419 |
T |
|
| Q |
673 |
gcatagtgaaataaggcgtaaatccctcctagtttctcgattatccttctttggaattaagac--tatttatttccactagtttttcagggaactcatct |
770 |
Q |
| |
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| ||||||||| || ||||||||| | | |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| || |
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| T |
15163420 |
tccaagtgaaatagggtgtaaatcccacgttgtttctggattatccttctttggaattaagacgatatttgtttccactagtttttccgggaactcgcct |
15163519 |
T |
|
| Q |
771 |
gtattcagccacaagacttaagtatgaaaaatctctgc |
808 |
Q |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
15163520 |
gtattcagccacaaaactctagtatgaaaaatctctgc |
15163557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 133 - 395
Target Start/End: Original strand, 15162821 - 15163084
Alignment:
| Q |
133 |
gaggcctcttcatattttttaagtgcttctgaaagagcttgtgcctctttttcgtttgccctacaaaacataaaatagtcatctacaaatgataagtgcg |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | | || ||||||||||| | ||||||||||||| | |||| |||||||| ||||| ||||||| | |
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| T |
15162821 |
gaggcctcttcatattttttaagtgcctctaacatattttttgcctcttttttgcttgccctacaaaataaaaaacagtcatctgcaaataataagtgtg |
15162920 |
T |
|
| Q |
233 |
tcaggagt-gggctcctcaacacactttaataccatggatttcccctcgggcttctaa-cttttcgagcaacactgagaggcattccgcacaaataataa |
330 |
Q |
| |
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|| ||||| ||||||| | || ||||| ||||||||||| |||| |||||||||||| |||| ||||| ||| | |||| ||| ||||| |||||| |
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| T |
15162921 |
tctggagtggggctccccggcatactttgataccatggatgtcccatcgggcttctaatttttttgagcaggactaaaaggccttcaacacaagtaataa |
15163020 |
T |
|
| Q |
331 |
acaaagtatggggatgacggtttcccttgtcgtaagcctctttcaggatatcataaaccaatacc |
395 |
Q |
| |
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| | ||||||||| |||| | |||||||||||||||||| |||||| | ||||||||||||| |
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| T |
15163021 |
a-atggtatggggacaacgggcttccttgtcgtaagcctcttccaggatcttataaaccaatacc |
15163084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 521 - 618
Target Start/End: Original strand, 22409178 - 22409275
Alignment:
| Q |
521 |
cttcatgtgatgtaaaatttcagatgctaccaaaacattatcaagaatagatctattttccacaaaagttgattgttcttgtgaaatgcattttggta |
618 |
Q |
| |
|
||||||||||| || |||||| |||||||| | |||||||| |||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
22409178 |
cttcatgtgatttagaatttcggatgctactagaacattatttagaatatatctattttccgcaaaagttgattactcttgtgctatgcattttggta |
22409275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Original strand, 22409049 - 22409098
Alignment:
| Q |
404 |
tttcacccatttctcgtcgaaatccatcttcctcatcatacattggacaa |
453 |
Q |
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| T |
22409049 |
tttcacccatttctcgtcgaaccccatcttcctcatcatacctcggacaa |
22409098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 521 - 588
Target Start/End: Original strand, 40732440 - 40732507
Alignment:
| Q |
521 |
cttcatgtgatgtaaaatttcagatgctaccaaaacattatcaagaatagatctattttccacaaaag |
588 |
Q |
| |
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|||||||||||||||||||||| | |||| ||||||||||| | ||||||||||||| |||||||| |
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| T |
40732440 |
cttcatgtgatgtaaaatttcaaacactactaaaacattatccaagatagatctatttttcacaaaag |
40732507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 40732102 - 40732183
Alignment:
| Q |
232 |
gtcaggagtgg-gctcctcaacacactttaataccatggatttcccctcgggcttctaacttttcgagcaacactgagaggc |
312 |
Q |
| |
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||||||||||| ||||| | ||||||||| ||||||||||| ||||| || |||||||| || | ||||| |||||||||| |
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| T |
40732102 |
gtcaggagtggagctccccgacacactttgataccatggatgtccccacgagcttctaatttattgagcatgactgagaggc |
40732183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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