View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_11 (Length: 397)
Name: NF11834_low_11
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 39627859 - 39627488
Alignment:
| Q |
9 |
gagatggacatcaaaagtacaagccaaatagagagacagatatcacgtgccatacatagacgagaaacagagctgtaagtggcgacgatagcagggcaag |
108 |
Q |
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| T |
39627859 |
gagatggtaatcaaaagtacaagcaaaatagagagacagatatcacgtgccatacatagacgagaaacatagctgtaagtggcgacgatagcagggcaag |
39627760 |
T |
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| Q |
109 |
ataccagctatactccacaactaaatataagatctaaatcatttgataaaatctaatcacagttcatcttcatataacagtaggttgtagctgtaagaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39627759 |
ataccagctatactccacaactaaatataagatctaaatcatttgataaaatctaatcacagttcatcttcatataacagtaggttgtagctgcaagaca |
39627660 |
T |
|
| Q |
209 |
caggaaaatactttcgactaaacaaccataagtaatctcatgataacaaaaagaaaataaatatggacatttttccgtattatatgaacataaccgattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39627659 |
caggaaaatactttcgactaaacaaccataagtaatctcatgataacaaaaagaaaataaatatggacatttttccgtattatatgaacataaccgattt |
39627560 |
T |
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| Q |
309 |
tataagttataccgcttgaagcaaaaaacatatggaagctgtggctcatgtataaaagcttagaacaataat |
380 |
Q |
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||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39627559 |
tataagttataccacttgaagcaaaaaaaatatggaagttgtggctcatgtataaaagcttagaacaataat |
39627488 |
T |
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