View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_12 (Length: 394)
Name: NF11834_low_12
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_12 |
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| [»] scaffold1067 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Original strand, 43880711 - 43881075
Alignment:
| Q |
12 |
cagaacaacaactgctgcaagaacacagcagcaactgcccaaaacctgctatgctcaaaacataaacagaccgaacagtgtgtgcacaaggcagccaacc |
111 |
Q |
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| T |
43880711 |
cagaacaacaactgctgcaagcacacagcagcaactgcccaaaacctgctatgctcaaaacataaacagaccgaacagtgtgtgcacaaggcagccaacc |
43880810 |
T |
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| Q |
112 |
cgcaacagcaaccgaagcattaacggataatttgttgttagtactggtttagtagattgt--agtcgggaatcaccgctttgaaactaatgtacacaaga |
209 |
Q |
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| T |
43880811 |
cgcaacagcaaccgaagcattaacggataatttgttgttagtactggtttagtagattgtgtagtcgggaatcaccgctttgaagctaatgtacacaaga |
43880910 |
T |
|
| Q |
210 |
ttttattgtaccacgtttgaaattgtaggacaggtcactatggcaattgcaatgacatgaatgattaaattcttggatgagaatctagaggtacttaata |
309 |
Q |
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| T |
43880911 |
ttttattgtaccacgtttgaaattgtaggacaggtcactatggcaattgcaatgacatgaatgattaaattcttggatgagaatctagaggtacttaata |
43881010 |
T |
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| Q |
310 |
aagctaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctcc |
374 |
Q |
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| T |
43881011 |
aagttaaggttagtgaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctcc |
43881075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 139 - 372
Target Start/End: Original strand, 11239732 - 11239966
Alignment:
| Q |
139 |
taatttgttgttagtactggtttagtagattgt--agtcgggaatcaccgctttgaaactaatgtacacaagattttattgtaccacgtttgaaattgta |
236 |
Q |
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| T |
11239732 |
taatttgtt-ttagtattggtttagtagactgtgtagtttcgaatcactgctttgaagctaatgtacgcaagattttattgtaccgcggttgaaattgta |
11239830 |
T |
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| Q |
237 |
ggacaggtcactatggcaattgcaatgacatgaatgattaaattcttggatgagaatctagaggtacttaataaagctaaggttagtgaattgtaggtgt |
336 |
Q |
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| T |
11239831 |
ggacaggtcactatggcaattgcaatgacatgaatgatcaaattcttgtatgagaatctagaggtacttaatgaagttaaggttagtgaattgtaggtgt |
11239930 |
T |
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| Q |
337 |
cttccacatcttcatccgaggaacatagaacactct |
372 |
Q |
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| T |
11239931 |
cttccacatcttcatccgaggaacatagaacactct |
11239966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 52475871 - 52475799
Alignment:
| Q |
236 |
aggacaggtcactatggcaattgcaatgacatgaatgattaaattcttggatgagaatctagaggtacttaat |
308 |
Q |
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| T |
52475871 |
aggacaggacactatagcaattgcaatgacatggatgatcaaatttgtggatgagaatcaggaggttcttaat |
52475799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 17792695 - 17792745
Alignment:
| Q |
324 |
gaattgtaggtgtcttccacatcttcatccgaggaacatagaacactctcc |
374 |
Q |
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| T |
17792695 |
gaattgtacgtgtcttccacatcttcatatgaggaacatagaccactctcc |
17792745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 370 - 338
Alignment:
| Q |
342 |
acatcttcatccgaggaacatagaacactctcc |
374 |
Q |
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| T |
370 |
acatcttcatccgaggaacatagaacaccctcc |
338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 13737903 - 13737871
Alignment:
| Q |
342 |
acatcttcatccgaggaacatagaacactctcc |
374 |
Q |
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| T |
13737903 |
acatcttcatccgaggaacatagaacaccctcc |
13737871 |
T |
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