View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_13 (Length: 357)
Name: NF11834_low_13
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 49755859 - 49755520
Alignment:
| Q |
1 |
ttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatcacgatcacattatcacctctttcaatcaaacga |
100 |
Q |
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| T |
49755859 |
ttcaaaattgggattaccaatatgatgaacaacattctctttccttccagtaaaataattatcaatcacgatcacattatcacctctttcaatcaaacga |
49755760 |
T |
|
| Q |
101 |
tcaacaagatgacttccaacgaaaccagctccaccggtaaccagtactctcttctgtctcttgcttttcaatccaacggccaatggaactcttcgttttc |
200 |
Q |
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| T |
49755759 |
tccacaagatgacttccaacgaaaccagctccaccggtaaccagtactctcttctgtctcttgcttttcaatccaacggccaatggaactcttcgttttc |
49755660 |
T |
|
| Q |
201 |
tttcatctctaccgtgttcctctaacagaactcgcctagtcggaagagttaactcggttccaacgaacgacgaagagtcatgatgttgtggaagagtgga |
300 |
Q |
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| T |
49755659 |
tttcatctctaccgtgttcctctaaaagaactcgcctagtcggaagagttaactccgttccaacgaacgaagaagagtcatgatgttgtggaagagtgga |
49755560 |
T |
|
| Q |
301 |
ccgagaagggagatagtggaagaagaaagtggaaattgct |
340 |
Q |
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| T |
49755559 |
tcgagaagggagatagtggaagaagaaagtggaaattgct |
49755520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 29127054 - 29126946
Alignment:
| Q |
35 |
ttctctttccttccagtaaaataattatcaatcacgatcacattatcacctctttcaatcaaacgatcaacaagatgacttccaacgaaaccagctccac |
134 |
Q |
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||||||||||| ||||||||| |||||||||| || || |||| || ||||| ||||||| |||||| |||||||||||||| |||||||| |||| |
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| T |
29127054 |
ttctctttcctaccagtaaaaaaattatcaataacaataacatcattccctctaccaatcaacttatcaaccagatgacttccaacaaaaccagcaccac |
29126955 |
T |
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| Q |
135 |
cggtaacca |
143 |
Q |
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| T |
29126954 |
cggtaacca |
29126946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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