View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11834_low_15 (Length: 280)

Name: NF11834_low_15
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11834_low_15
NF11834_low_15
[»] chr5 (5 HSPs)
chr5 (84-269)||(17431009-17431193)
chr5 (84-246)||(41612220-41612381)
chr5 (1-79)||(40045274-40045354)
chr5 (189-270)||(41865673-41865754)
chr5 (138-211)||(4421382-4421454)
[»] chr3 (4 HSPs)
chr3 (84-270)||(53940814-53941000)
chr3 (96-252)||(34294249-34294404)
chr3 (122-211)||(34434315-34434403)
chr3 (122-185)||(31770164-31770226)
[»] chr7 (3 HSPs)
chr7 (84-270)||(35552779-35552964)
chr7 (84-270)||(19914181-19914366)
chr7 (144-201)||(39474540-39474596)
[»] chr2 (6 HSPs)
chr2 (84-253)||(40109863-40110031)
chr2 (84-270)||(19469346-19469531)
chr2 (84-264)||(18845092-18845271)
chr2 (87-211)||(11580002-11580125)
chr2 (110-209)||(12562579-12562677)
chr2 (144-185)||(7300259-7300299)
[»] chr6 (2 HSPs)
chr6 (87-270)||(25349719-25349901)
chr6 (87-196)||(26513294-26513402)
[»] chr8 (5 HSPs)
chr8 (99-270)||(31639971-31640142)
chr8 (84-270)||(25192585-25192770)
chr8 (92-270)||(25879011-25879188)
chr8 (85-253)||(39432136-39432303)
chr8 (96-210)||(42579916-42580029)
[»] chr1 (3 HSPs)
chr1 (103-270)||(52691033-52691199)
chr1 (96-252)||(44762046-44762201)
chr1 (195-270)||(705674-705749)
[»] chr4 (8 HSPs)
chr4 (114-270)||(55479736-55479892)
chr4 (162-270)||(32384873-32384981)
chr4 (1-79)||(45991105-45991185)
chr4 (145-253)||(9321795-9321902)
chr4 (145-253)||(9376274-9376381)
chr4 (144-201)||(34104903-34104959)
chr4 (134-202)||(12225795-12225862)
chr4 (122-203)||(19119640-19119720)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 84 - 269
Target Start/End: Complemental strand, 17431193 - 17431009
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17431193 ttccattctttatggtggttagaggctaataatgccttgtttgtgcatgacactcagatgtggtggtcggaccc-tatgttatgtttgggtatcgactga 17431095  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctat 269  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||    
T  17431094 ccgtaattttgtaaatattgtttgactgttctttttaaggggtggcctttcagtacatcttgtgctgaaatggttccactgcctat 17431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 41612381 - 41612220
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  41612381 ttccattctttatggtggttacaggctaataatgccttgtttgtgcacggcactcaaatgtggtggtcggaccc-tatgttatgtctgggtatcgactga 41612283  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgt 246  Q
    |||||||||||||||||||||||| ||  ||||||||| ||||| |||| |||||||||||||    
T  41612282 ccgtaattttgtaaatattgtttgcctattctttttaaggggtgacctttcagtacatcttgt 41612220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40045354 - 40045274
Alignment:
Q  1 acacctttgtattttctctct--gtgttccaagttttggtggttcttccacgttcttggctaataaattttgcagattcaa 79  Q
    |||||||| |||||| |||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  40045354 acacctttctattttatctctttgtgttccaagttttggtggttcttccaccttcttggctaataaattttgccgattcaa 40045274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41865673 - 41865754
Alignment:
Q  189 attttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    |||||| |||||||||||||||| |||||||||  ||||| ||||||||||||||||||||||||  ||||||||| |||||    
T  41865673 attttgcaaatattgtttgactgttctttttaagaggtggtcttccagtacatcttgtgctgaaatggttccactgtctatg 41865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 4421454 - 4421382
Alignment:
Q  138 cagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 211  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||  ||   ||||||||||||| ||||||    
T  4421454 cagatgtggtggtcgaatccct-tgttatgtttgggtatcgactgactatagacttgtaaatattgtatgactg 4421382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 53941000 - 53940814
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||||||||    
T  53941000 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagttgtggtggtcgga-ccctatgttatgtctgggtatcgactga 53940902  T
Q  184 ccgtaa-ttttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||    
T  53940901 ccgtaatttttgtaaatattgtttgactcttctttttaaggggtggccgtccagtacatcttgtgctgaaatggttccactgcctatg 53940814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 34294249 - 34294404
Alignment:
Q  96 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 195  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||| |||||||| || |||||| |||||||||||||||||||||| | | || |||    
T  34294249 tggtggttaaaggctaataatgccttgtttgtgcatggcactcagatatggtggtc-gaaccctatcttatgtttgggtatcgactgactgaacttgtgt 34294347  T
Q  196 aaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaa 252  Q
    ||||||| |||| ||| ||| ||||  ||||| || |  ||||||||||||| ||||    
T  34294348 aaatattttttgtctgttctctttatggggtgaccctttagtacatcttgtgttgaa 34294404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 34434315 - 34434403
Alignment:
Q  122 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactg 211  Q
    ||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  34434315 gtttgtgcacgacactcagatgtggtggtcgaaccctt-tgttatgtttgggtatcgactgactgtagttttgtaaatattgtatgactg 34434403  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 31770164 - 31770226
Alignment:
Q  122 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgacc 185  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||| ||||||||| ||||||||||    
T  31770164 gtttgtgtatgacactcagagatggtggtcgga-ccctatgttgtgtttgggtttcgactgacc 31770226  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 35552964 - 35552779
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  35552964 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatggcactcagatgtggtggtcggaccc-tatgttatgtctgggtatcgactga 35552866  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    | ||||||||||||||||||||| |||  ||||||||| |||| |||||||| |||||||||||||||||  |||||||||||||||    
T  35552865 ctgtaattttgtaaatattgttttactattctttttaaggggttgccttccaatacatcttgtgctgaaatggttccactgcctatg 35552779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 19914366 - 19914181
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||  || |||||||||||    
T  19914366 ttccattctttatggtggttacaggttaataatgccttgtttgtgcatgacactcagatgtggtggtcggatct-tatgttatgactgagtatcgactga 19914268  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    | |||||||||||||||||||||||| | ||||||||| |||||| ||||||| ||||||||||||||||  |||||||||||||||    
T  19914267 ctgtaattttgtaaatattgtttgacagttctttttaaggggtggtcttccagaacatcttgtgctgaaatggttccactgcctatg 19914181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 39474540 - 39474596
Alignment:
Q  144 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 201  Q
    |||||||||||||| | ||||||| |||||||| ||||||||||| ||||||| ||||    
T  39474540 tggtggtcggaccctt-tgttatgcttgggtattgactgaccgtatttttgtacatat 39474596  T

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Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 40110031 - 40109863
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  40110031 ttccattctttatggtggttacaggctaataatgccttgtttgtgcatgacacttagatgtggtggtcggaccc-tatgttatgtctgggtatcgactga 40109933  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaa 253  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||    
T  40109932 ccgtaattttataaatattgtttgactgttctttttaaggggtggccttttagtacatcttgtgctgaaa 40109863  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 19469346 - 19469531
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||| || |||||||||||    
T  19469346 ttccattctttatgatggctacaagctaataatgccttgtttgtgcatgacactcacatgtggtggtcggatcc-tatgttatgtctgagtatcgactga 19469444  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||| |||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||| |||||||||||    
T  19469445 ccgtacttttgtaaatattgtttgactgttcttttttaggggtggccctccagtacatcttgtactgaaccggtttcactgcctatg 19469531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 264
Target Start/End: Original strand, 18845092 - 18845271
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| |||||||| | | ||| |||||||||| |||||||||||||  ||||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  18845092 ttccattctttatggtagctgcagactaataatgccttgtttgtgcatggtactcagatgtgatggtcggaccc-tatgttatgtctaggtatcgactga 18845190  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactg 264  Q
    ||||| |||||||||||||||||||||| |||| || | | |||||| | ||||||||||||| ||||||| ||| |||||    
T  18845191 ccgtacttttgtaaatattgtttgactgttcttgtttacgagtggcccttcagtacatcttgtactgaaacggtttcactg 18845271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 11580002 - 11580125
Alignment:
Q  87 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 186  Q
    |||| ||| |||||| || |||||||||| || | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |    
T  11580002 cattctttgtggtggctaaaggctaataacgcctcgtttgtgcatgacactcagatgtggtggtcgaaccc-tatgttatgtttgggtatcgactgactg 11580100  T
Q  187 taattttgtaaatattgtttgactg 211  Q
     | ||||||||||||||||||||||    
T  11580101 aacttttgtaaatattgtttgactg 11580125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 12562677 - 12562579
Alignment:
Q  110 taataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgac 209  Q
    ||||||||| | |||| ||||||| ||| |||||||||||| ||| || |||||||| | |||||||||||||||| || || |||||||||||||||||    
T  12562677 taataatgcctggtttttgcatgagactgagatgtggtggttggatcc-tatgttatatctgggtatcgactgaccatagttgtgtaaatattgtttgac 12562579  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 7300299 - 7300259
Alignment:
Q  144 tggtggtcggacccctatgttatgtttgggtatcgactgacc 185  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  7300299 tggtggtcggaccctt-tgttatgtttgggtatcgactgacc 7300259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 87 - 270
Target Start/End: Complemental strand, 25349901 - 25349719
Alignment:
Q  87 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 186  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||     
T  25349901 cattctttatggtggttacatgctaataatgccttgtttgtgcatggcactcagatgtggtggtcggaccc-tatgttatgtctgggtatcgactgacca 25349803  T
Q  187 taattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||||  |||| ||||||||||    
T  25349802 taattttgtaaatattgtttgactgttctttttaaggggtggcctttcagtacatcttgggctgaaatggttctactgcctatg 25349719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 26513402 - 26513294
Alignment:
Q  87 cattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccg 186  Q
    |||| ||| ||||||||| ||||||||||||| | |||| |||| | ||| ||||||||||||||||| ||| ||||||| | |||||||||||||||||    
T  26513402 cattctttgtggtggttaaaggctaataatgcctcgtttatgcacggcacacagatgtggtggtcgga-cccaatgttatttctgggtatcgactgaccg 26513304  T
Q  187 taattttgta 196  Q
    || |||||||    
T  26513303 tacttttgta 26513294  T

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Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 31639971 - 31640142
Alignment:
Q  99 tggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaatttt-gtaa 197  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  31639971 tggttacaggttaataatgccttgtttgtgcatgacactcagttgtggtggtcggaccc-tatgttatgtctgggtatcgactgaccgtaatttttgtaa 31640069  T
Q  198 atattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||    
T  31640070 atattgtttgactgttctttttaaggggtggccgtccagtacatcttgtgctgaaatggttccactgcctatg 31640142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 25192770 - 25192585
Alignment:
Q  84 ttccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactga 183  Q
    ||||||| |||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||    
T  25192770 ttccattatttatggtggctacaagctaataatgccttgtttgtgcatggcactcagatgtggtggtcgtaccc-tatgttatgtctgggtatcgactga 25192672  T
Q  184 ccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||| |||||||||||||||||||||| | ||||| | |||||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  25192671 ccgtacttttgtaaatattgtttgactgttgttttttaggggtggccctccagtacatcttgtactgaaacggtttcactgcctatg 25192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 25879188 - 25879011
Alignment:
Q  92 tttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaatt 191  Q
    ||||||||||||||||||||||||||  || ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  25879188 tttatggtggttacaggctaataatgtcttctttgtgcatggtactcagatgtggtggtcggaccc-tatgttatgtatgggtatcgactaaccgtaatt 25879090  T
Q  192 ttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||||||||| |||||||| |||||||||  ||||||||| ||||||||||||||||||||  |||||||||||||||    
T  25879089 ttgtaaatattatttgactgttctttttaagaggtggcctttcagtacatcttgtgctgaaatggttccactgcctatg 25879011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 85 - 253
Target Start/End: Complemental strand, 39432303 - 39432136
Alignment:
Q  85 tccattttttatggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgac 184  Q
    |||||| |||||||||| |||| ||||||||||  |||||||||||||| ||||||||||||| ||| ||||| |||||||||| |||||||||||||||    
T  39432303 tccattctttatggtggctacaagctaataatgtcttgtttgtgcatgatactcagatgtggtcgtcagaccc-tatgttatgtctgggtatcgactgac 39432205  T
Q  185 cgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaa 253  Q
    | || |||||||||||||||||||||| ||| ||| | || ||||| | ||||||||||||| ||||||    
T  39432204 catacttttgtaaatattgtttgactgttctcttttagggatggcccttcagtacatcttgtactgaaa 39432136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 42579916 - 42580029
Alignment:
Q  96 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 195  Q
    |||||| || ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||| ||| |||| |    
T  42579916 tggtggctaaaggctaataatgcctcgtttgtgcatgacactcagatgtggtggtc-gaaccctatgttatgtttggatatcgattgactgtacttttat 42580014  T
Q  196 aaatattgtttgact 210  Q
    |||||||||||||||    
T  42580015 aaatattgtttgact 42580029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 270
Target Start/End: Complemental strand, 52691199 - 52691033
Alignment:
Q  103 tacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 202  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  52691199 tacaagctaataatgtcttgtttgtgcatgacactcagatgtggtggtcggaccc-tatgttatgtctgggtatcgactgaccgtaattttgtaaatatt 52691101  T
Q  203 gtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||    
T  52691100 gtttgacttttctttttaaggggtggccttccagtacatcttgtgctgaaatggttccactacctatg 52691033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 44762201 - 44762046
Alignment:
Q  96 tggtggttacaggctaataatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgt 195  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| | | || |||    
T  44762201 tggtggttaaaggctaataatgcattgtttgtgcatggcactcagatgtgctggtc-gaaccctatgttatgtttgggtatcgactgactgaacttgtgt 44762103  T
Q  196 aaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaa 252  Q
    |||||||||||| ||| ||| |||   |||||  | |  ||||||||||||||||||    
T  44762102 aaatattgtttgtctgttctctttgtggggtgatcctttagtacatcttgtgctgaa 44762046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 705749 - 705674
Alignment:
Q  195 taaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| ||||  ||||||||||    
T  705749 taaatattgtttgactgttctttttaaggggtagcctttcagtacatcttgtgctgaaatagttttactgcctatg 705674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 55479892 - 55479736
Alignment:
Q  114 aatgctttgtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaatttt-gtaaatattgtttgactga 212  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||     
T  55479892 aatgccttgtttgtgcatgacactcagttgtggtggtcggaccc-tatgttatgtctgggtatcgactgaccgtaatttttgtaaatattgtttgactgt 55479794  T
Q  213 tctttttaaagggtggccttccagtacatcttgtgctgaaacagttccactgcctatg 270  Q
    ||||||||| |||||||  ||||||||||||||||||||||  |||||||||||||||    
T  55479793 tctttttaaggggtggctgtccagtacatcttgtgctgaaatggttccactgcctatg 55479736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 32384873 - 32384981
Alignment:
Q  162 gttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatcttgtgctgaaacagttcca 261  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| ||||||||  ||||||    
T  32384873 gttatgtctgggtatcgactgactgtaattttgtaaatattgtttgactgttctttttacggggtggccttccagtacatcttatgctgaaatggttcca 32384972  T
Q  262 ctgcctatg 270  Q
    |||||||||    
T  32384973 ctgcctatg 32384981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 45991185 - 45991105
Alignment:
Q  1 acacctttgtattttctctct--gtgttccaagttttggtggttcttccacgttcttggctaataaattttgcagattcaa 79  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  45991185 acacctttgtattttctctctttgtgttccaagttttggtggttcttccaccttcttggctaataaattttgccgattcaa 45991105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 9321795 - 9321902
Alignment:
Q  145 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatctt 244  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||  ||| | |||||| | | |||||||||||    
T  9321795 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactgttcccttttaggggtggtccttcagtacatctt 9321893  T
Q  245 gtgctgaaa 253  Q
    || ||||||    
T  9321894 gtactgaaa 9321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 253
Target Start/End: Original strand, 9376274 - 9376381
Alignment:
Q  145 ggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattgtttgactgatctttttaaagggtggccttccagtacatctt 244  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||| ||  ||| | |||||| | | |||||||||||    
T  9376274 ggtggtcggaccc-tatgttatgtttgagtatcgactgaccgtacttttgtaaatattgtctgactgttcccttttaggggtggtccttcagtacatctt 9376372  T
Q  245 gtgctgaaa 253  Q
    || ||||||    
T  9376373 gtactgaaa 9376381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 34104959 - 34104903
Alignment:
Q  144 tggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatat 201  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  34104959 tggtggtcggaccctt-tgttatgtttgggtatcgactgaccgtatttttgtacatat 34104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 12225795 - 12225862
Alignment:
Q  134 cactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatatt 202  Q
    |||| ||||||||||||||||||| ||| || | | |||||||||||||||| | ||||||||||||||    
T  12225795 cacttagatgtggtggtcggaccc-tatattttatctgggtatcgactgacctttattttgtaaatatt 12225862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 19119720 - 19119640
Alignment:
Q  122 gtttgtgcatgacactcagatgtggtggtcggacccctatgttatgtttgggtatcgactgaccgtaattttgtaaatattg 203  Q
    ||||||||| |||||| |||  |||||||| ||||  | |||||||| ||||||||||||||||||  ||| ||||||||||    
T  19119720 gtttgtgcacgacacttagagttggtggtcagaccttt-tgttatgtctgggtatcgactgaccgttgtttagtaaatattg 19119640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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