View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_18 (Length: 248)
Name: NF11834_low_18
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 43210545 - 43210629
Alignment:
| Q |
16 |
aatatcaactactcccaagtgacattaatgccaaaacgatgaatttgcatgacaaccgaaattttaattaagacaaattttaact |
100 |
Q |
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| T |
43210545 |
aatatcaactactcccaaccgacattaatgccaagacgatgaatttgtatgacaaccgaaattttaattaagataaattttaact |
43210629 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 47153296 - 47153227
Alignment:
| Q |
181 |
tatcatgataagaatgaattattaacgaatgaatgaat----gtagttaattcattcttaattttaattt |
246 |
Q |
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| T |
47153296 |
tatcatgataagaatgaattgttaatgaatgaatgaatgaacgtagttaatgcattcttaaagttaattt |
47153227 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 4174235 - 4174321
Alignment:
| Q |
12 |
gaagaatatcaactactcccaagtgacattaatgccaaaacgatgaatttgcatgacaaccgaaattttaattaagacaaattttaactg |
101 |
Q |
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| T |
4174235 |
gaagaatatcaactactcccaaccgacattaatgtcaagacgatgaatttgtatg---accgaaattttaattaagacaaattttaactg |
4174321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 4174386 - 4174463
Alignment:
| Q |
166 |
ggcgttgatttcctctatcatgataagaatgaattattaacgaatgaatgaatgtagttaattcattcttaattttaatttt |
247 |
Q |
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| T |
4174386 |
ggcgttgatttcctatatcatgataagaatgaattatt----aatgaatgaatgtagttaatgcattcttaattctaatttt |
4174463 |
T |
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