View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_2 (Length: 782)
Name: NF11834_low_2
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_2 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 679; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 13 - 766
Target Start/End: Original strand, 44948976 - 44949731
Alignment:
| Q |
13 |
agatacattagcaattaagttaaaaagagagtgaaaaaagaaaccacaatagctgttatgtgagtcaaaacttgg-agagtcgtttatnnnnnnnnnnnn |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44948976 |
agatacattagcaattaagttaaaaagagagtgaaaaaagaaaccacaatagctgttatgtgagtcaaaacttgggagagtcgtttataaaaaaaaatta |
44949075 |
T |
|
| Q |
112 |
nnn-tcattcagtagtaatcaactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctc |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
44949076 |
aaaatcattcagtagtaatcaactcattcagaaatccaaccatttctgataatagacacatgctcctggagagacaacgccatcgggtgaacaaaagctc |
44949175 |
T |
|
| Q |
211 |
attcgctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949176 |
attcgctcacaagaaaaacatggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaa |
44949275 |
T |
|
| Q |
311 |
ctggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949276 |
ctggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgt |
44949375 |
T |
|
| Q |
411 |
gacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttcttt |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949376 |
gacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttcttt |
44949475 |
T |
|
| Q |
511 |
agagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgcttta |
610 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949476 |
agagcatctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgcttta |
44949575 |
T |
|
| Q |
611 |
tatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttc |
710 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949576 |
tatcttcgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttc |
44949675 |
T |
|
| Q |
711 |
tctattcatgtctctttacgagattcctctgttttccctgctacatatgaggttat |
766 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44949676 |
tctattcatgtctctttacgagattcctctgttttccctgctacatatgaggttat |
44949731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 142 - 650
Target Start/End: Original strand, 6469968 - 6470464
Alignment:
| Q |
142 |
aaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaacatggaaaggaag |
241 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| | || ||||||||| ||||| | ||||||||||||||| || | |||||||||||||||||||| || |
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| T |
6469968 |
aaatccaaccatttctgaaaatacacacatgttgttggagagacaacaccatccgatgaacaaaagctcatccgttgacaagaaaaacatggaaagggag |
6470067 |
T |
|
| Q |
242 |
taaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagc |
341 |
Q |
| |
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| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
6470068 |
tcgagtcagcagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacaggaatagatgcaaaatccccatatccagt |
6470155 |
T |
|
| Q |
342 |
acttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctcttttta |
441 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| |||||| | ||| ||||| |
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| T |
6470156 |
acttgtcatctgcattatctcatcatctaaaaccaaagtttgtaaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactcctttta |
6470255 |
T |
|
| Q |
442 |
atccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcc |
541 |
Q |
| |
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| ||||||||||||||||||||||||||||||| | | || ||||||||| || |||| | ||||||||| ||||||||| || ||||||| ||| |
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| T |
6470256 |
acccactccaaacatccatcacatgtggaaactctctccaatgaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcc |
6470355 |
T |
|
| Q |
542 |
catcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctt |
641 |
Q |
| |
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| ||||| ||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| |||||| |
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| T |
6470356 |
cttcactgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctt |
6470455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 357 - 558
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
357 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
457 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
556 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
|
| Q |
557 |
gc |
558 |
Q |
| |
|
|| |
|
|
| T |
44943733 |
gc |
44943734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 606 - 668
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
606 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
668 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 131 - 650
Target Start/End: Complemental strand, 419727 - 419220
Alignment:
| Q |
131 |
aactcactcagaaatccaaccatttctgataatagacacatgctcctgtagagacaacgccatcgggtgaacaaaagctcattcgctcacaagaaaaaca |
230 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||| | || ||||||||| || || | ||||||||||||||| || | |||||||||||| |
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|
| T |
419727 |
aactcattcaaaaatccaaccatttctgataatagacacatgttgttggagagacaacaccgtctgttgaacaaaagctcatccgttgacaagaaaaaca |
419628 |
T |
|
| Q |
231 |
tggaaaggaagtaaagtagccagatttcttttcccctataactccacccttgcttttgcatatgtaacaagttttgccaactggaataaatgcaaaatcc |
330 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
419627 |
tggaaagggagtcgagtcaacagatttcttttc------------acccttgcttttgcatatgtaacaagttttgccaacgggaatagatgcaaaatcc |
419540 |
T |
|
| Q |
331 |
ccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagattt |
430 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||| |||||| |
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|
| T |
419539 |
ccatatccagtacttgtcatctgcatgatctcatcgtctaaaaccaaagtttgcaaaatctcttctatttggtctcccgtgacttgagttgtgaagaccc |
419440 |
T |
|
| Q |
431 |
cgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccat |
530 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||||||||||||| || | |
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|
| T |
419439 |
cactctttttaacccactccaaacatccatcacatgtggaaactctctgtaatgaaatgcattgcaagcacgttttctttagagcatctataaaaaccgt |
419340 |
T |
|
| Q |
531 |
atcaagcttcccatcactataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgtta |
630 |
Q |
| |
|
|||||| |||| || || ||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| | |
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|
| T |
419339 |
atcaagactcccttcgctgtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaa |
419240 |
T |
|
| Q |
631 |
ggaacttcctttaccatact |
650 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
419239 |
ggaagttcctttaccatact |
419220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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