View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11834_low_20 (Length: 245)
Name: NF11834_low_20
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 55187981 - 55188198
Alignment:
| Q |
1 |
ctcttgacagctcctctgataagcattaccaaacaagaaaagagaaatagtattttcatctaaagaaccaattttccatatgcaatagctcttcccattt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55187981 |
ctcttgacagttcctctgataagcattaccaaacaagaaaagagaaatagtattttcatctaaagaaccaattttccatatgcaatagctcttcccattt |
55188080 |
T |
|
| Q |
101 |
gaacttattttctgaatccccttctcagtcaacactccaacagtgacccaacttccagagaaagaatctccattcaccaaattcctgaatatgcagagtc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55188081 |
gaacttgttttctgaatccccttctcagtcaacactccaacagtgacccaacttccagagaaagaatctccattcaccaaattcctgaatatgcagagtc |
55188180 |
T |
|
| Q |
201 |
agtatgaattttagatct |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
55188181 |
agtatgaattttagatct |
55188198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University