View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_5 (Length: 564)
Name: NF11834_low_5
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_5 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 28282557 - 28281994
Alignment:
| Q |
1 |
tatgcacaaagaaggttcatatatatcactctgctgcgcacattttttctaatttactatttcttcataacaactgtctcatgtgcccttatatttcaga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282557 |
tatgcacaaagaaggttcatatatatcactttgctgcgcacattttttctaatttactatttcttcataacaactgtctcatgtgcccttatatttcaga |
28282458 |
T |
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| Q |
101 |
caaacttaagcctcgtcgtgaatgcctattttatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282457 |
caaacttaagcctcgtcgtgaatgcctattttatatatacattaagcagaaagttcaaacatactttacaacactgttatattaacacaataaaaataat |
28282358 |
T |
|
| Q |
201 |
gcaaaaactaacttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28282357 |
gcaaaaactaacttacttgcagccgaagaaacctcctttcacagtagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaag |
28282258 |
T |
|
| Q |
301 |
ctgaatataagacacccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28282257 |
ctgaatataagacacccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatggcagt |
28282158 |
T |
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| Q |
401 |
actgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttccca |
500 |
Q |
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| T |
28282157 |
accgaattttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttccca |
28282058 |
T |
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| Q |
501 |
gcctatgtttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
564 |
Q |
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| T |
28282057 |
gcctatgtttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
28281994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 210 - 564
Target Start/End: Complemental strand, 28290624 - 28290269
Alignment:
| Q |
210 |
aacttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatata |
309 |
Q |
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||||||||||||||| |||||||||| ||||||| | | || |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
28290624 |
aacttacttgcagccaaagaaacctcttttcacagtcaacacggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatata |
28290525 |
T |
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| Q |
310 |
agaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattatgccaaatttatagaatcaactaatggcagtactgaat |
407 |
Q |
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||||| || ||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
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| T |
28290524 |
agacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaat |
28290426 |
T |
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| Q |
408 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatg |
507 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||| | |||||||||||||| |||||||| ||||||||| |||| || ||||||||||||||||| |
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| T |
28290425 |
tttctcctgagcagactctccccacatcagaaacacgaccccttccttcttctcagagatcgtcttgataacaacatctgtgaattgttcccagcctata |
28290326 |
T |
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| Q |
508 |
tttgcatgtgcatttgcattattttcatttatcctacctgaattgaaagctagttac |
564 |
Q |
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|||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |
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| T |
28290325 |
tttgcatgtgaatttaaattatcttcattcttcctacctgaattgaaagctagttac |
28290269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 29558152 - 29558432
Alignment:
| Q |
12 |
aaggttcatatatatcactctgctgcgcacattttttc-taatttactatttcttcataacaactgtctcatgtgcccttatatttcagacaaacttaag |
110 |
Q |
| |
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||||||||||| |||||||||||||| || |||||||| |||||| |||||||||||||||| ||||||||||||| || | ||||||||||||||||| |
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| T |
29558152 |
aaggttcatatctatcactctgctgcacatattttttcctaatttggtatttcttcataacaaatgtctcatgtgccgttctttttcagacaaacttaag |
29558251 |
T |
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| Q |
111 |
cctcgtcgtgaatgcctattttatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaacta |
210 |
Q |
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| T |
29558252 |
cctcgttgtgaatacatat-----aaat-ca--aagcagaaagttcaaacatactttacaacactgttatattaacacaataaatataatgcaaaaacaa |
29558343 |
T |
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| Q |
211 |
acttacttgcagccgaagaaacctcctttcacattagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaa |
299 |
Q |
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|||||||||||||||||||||||| ||||||| | | |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
29558344 |
ccttacttgcagccgaagaaacctcttttcacagtcaacacggaaggatgctcagctttcagaatgtgatgcttggtttgatcaattaa |
29558432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 408 - 546
Target Start/End: Original strand, 29558598 - 29558736
Alignment:
| Q |
408 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcctatg |
507 |
Q |
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||||||||||||| ||||| ||||| ||||||||| | | || |||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
29558598 |
tttctcctgagcagactctgcccactgcagaaacatgacactatctttcttctctgagattgtcttgataacagaatccgtaaattgttcccagcctata |
29558697 |
T |
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| Q |
508 |
tttgcatgtgcatttgcattattttcatttatcctacct |
546 |
Q |
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||||||||| |||||||||||| |||||| |||||||| |
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| T |
29558698 |
tttgcatgtccatttgcattatcttcattcttcctacct |
29558736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 408 - 504
Target Start/End: Complemental strand, 28303174 - 28303078
Alignment:
| Q |
408 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctctgagatcgttttgataacagcatccgtaaattgttcccagcct |
504 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||| |||||||||||||||||| |
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| T |
28303174 |
tttctcctgagcagactttccccacagcagaaacacaactccttccttcttctgtgagattgtcttgataacagtatcagtaaattgttcccagcct |
28303078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 28278672 - 28278569
Alignment:
| Q |
132 |
tatatatacattaagcagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaa |
231 |
Q |
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|||| ||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||| |||||||||||||| |||||| |
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| T |
28278672 |
tatacatacactaagaagaaagttcaaacatactttataacactgctatattaacacaataaatagaatgcaaaaaccaacttacttgcagctaaagaaa |
28278573 |
T |
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| Q |
232 |
cctc |
235 |
Q |
| |
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|||| |
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| T |
28278572 |
cctc |
28278569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 147 - 312
Target Start/End: Complemental strand, 19251309 - 19251144
Alignment:
| Q |
147 |
cagaaatttcaaacatactttacaacactgttatattaacacaataaaaataatgcaaaaactaacttacttgcagccgaagaaacctcctttcaca-tt |
245 |
Q |
| |
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|||||| |||||||||| |||||||||||| |||||||||||| |||| || ||||||||| | ||||||||||||| ||||||||| ||||||| | |
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| T |
19251309 |
cagaaagttcaaacatattttacaacactgctatattaacacagtaaatattatgcaaaaatcatcttacttgcagccaaagaaaccttttttcacagtc |
19251210 |
T |
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| Q |
246 |
agctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatataaga |
312 |
Q |
| |
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| || |||| |||||| ||||||| ||||| |||||||||||| |||||||| |||| | |||||| |
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| T |
19251209 |
aact-cagagggatgtgcagcttttagaatgtgatgcttggttgcatcaattatgctgcacataaga |
19251144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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