View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11834_low_7 (Length: 503)
Name: NF11834_low_7
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 3435723 - 3435390
Alignment:
| Q |
1 |
cgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3435723 |
cgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatc |
3435624 |
T |
|
| Q |
101 |
cgtgcacctccttcaaatttttaaaatatatattccaattaaaagatactattccacgcaatagtatctcttatactctctttaatccaatttttattat |
200 |
Q |
| |
|
|||| ||||| ||||||| |||| | | || || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3435623 |
cgtgaacctctttcaaat--ttaacaca-atctt---------------tattccatgcaatagtatctcttatactctctttaatccaatttttattat |
3435542 |
T |
|
| Q |
201 |
cccaaaaataactaatgttgagatttcatttaaaatatatattacgaaatcgtt-ttgtaaaaagattcgttttggaaatgaagttggctcctttannnn |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3435541 |
cccaaaaataactaatgttgagattccatttaaaatatatattacgaaatcgttgttgtaaaaagattcgttttggaaatgaagttggctcctttatttt |
3435442 |
T |
|
| Q |
300 |
nnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3435441 |
tttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 438 - 493
Target Start/End: Complemental strand, 3435304 - 3435249
Alignment:
| Q |
438 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccccctatg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccccctatg |
3435249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University