View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_8 (Length: 480)
Name: NF11834_low_8
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 5368094 - 5367825
Alignment:
| Q |
19 |
aaggcttgtttctattaaagttgatttggccaatgcacacagcaagttgaaatggcacttcattctggaagtacttagggaaaccaactttcctaaaatt |
118 |
Q |
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| T |
5368094 |
aaggcttgtttctattaaagttgatttggccaatgcattctggaagttgaaatggcacttcattctggaagtacttagggaaaccaactttcctaaaact |
5367995 |
T |
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| Q |
119 |
gcatttccagtgtgtaaagcaatgttatgcgttaagccataaagggaagttagaatggaaatccaatttctccctgaattgtgattgnnnnnnntggtcc |
218 |
Q |
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| T |
5367994 |
gcatttcaagtgtgcaaagcaatgttatgcgttaagccataaagggaagttagaagggcaatccaatttctccctgaattgtgattgaaaaaaatggtcc |
5367895 |
T |
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| Q |
219 |
tgtaatgtttgatgcgaacccagaatgtagaaacaatacatggaaggaagcaagacagcactgaaaatta |
288 |
Q |
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| T |
5367894 |
tgtaatgtttgatgcgaacccataatgtagaaacaatacatggaaggaagcaagacagcactgaaaatta |
5367825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 304 - 471
Target Start/End: Complemental strand, 5367834 - 5367667
Alignment:
| Q |
304 |
ctgaaaattaaagtaaaatacaataggatgaagatcctattgaccactcaagccaatgctctgcctaacaaactcaatgatttcactcccttcctttctc |
403 |
Q |
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| T |
5367834 |
ctgaaaattaaagtaaaatacaataggatgaagatcctattgaccactcaagccaatgctctgcctaacaaactcaatgatttcactcccttcctttctc |
5367735 |
T |
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| Q |
404 |
tccactaagaatccttataagagaatttccttacacaattcagttatcatttcctgctcactctctgc |
471 |
Q |
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| T |
5367734 |
tccactaagaatccttataagagaatttccttacacaattcagttatcatttcctgctcactctctgc |
5367667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 14115243 - 14115185
Alignment:
| Q |
292 |
agtgtattatttctgaaaattaaagtaaaatacaataggatgaagatcctattgaccac |
350 |
Q |
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| T |
14115243 |
agtgtattatttatgaaaatcaaagaaaaatacaatataatgaagatcctattgtccac |
14115185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 27578978 - 27578920
Alignment:
| Q |
292 |
agtgtattatttctgaaaattaaagtaaaatacaataggatgaagatcctattgaccac |
350 |
Q |
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| T |
27578978 |
agtgtattatttctggaaatcaaaggaaaatacaatagaatgaagatcctattgtccac |
27578920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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