View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11834_low_9 (Length: 446)
Name: NF11834_low_9
Description: NF11834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11834_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 28281879 - 28281440
Alignment:
| Q |
1 |
tcacaaaaatgtaaaatatctaacctgagagaacagcattcagcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28281879 |
tcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaa |
28281780 |
T |
|
| Q |
101 |
caaaatctactaatactatgttaaaccatctacacaaatttgtgaataacagaaaaatacatatcggtccacaatgtattcactaaccctgtatgcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28281779 |
caaaatctactaatactatgttaaaccatctacacaaatttgtgaataacagaaaaatacatattggtccacaatgtattcactaaccctgtatgcttta |
28281680 |
T |
|
| Q |
201 |
attacgaatgactaatccacaaatctgaaatccatcattttagtatattttattaggaaatcactctttttgcataaaataaatgtgaaatgttatggac |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28281679 |
attacgaatgactaatccacaaatctgaaatccgtcattttagtatattttattaggaaatcactctttttgcataaaacaaatgtgaaatgttatggac |
28281580 |
T |
|
| Q |
301 |
aagattctttaaagaatgatcacaatatcaaaataaccaatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28281579 |
aagattctttaaagaatgatcacaatatcaaaataaccaatttctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatga |
28281480 |
T |
|
| Q |
401 |
cgtagaaccttacaatcaagatcattcttaacctccttaa |
440 |
Q |
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| T |
28281479 |
cgtagaaccttacaatcaagatcattcttaacctccttaa |
28281440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28290143 - 28290039
Alignment:
| Q |
1 |
tcacaaaaatgtaaaatatctaacctgagagaacagcattcagcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||| |
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| T |
28290143 |
tcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaa-tcaaagctgtgatcagagaatagtttttgaaaaa |
28290045 |
T |
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| Q |
101 |
caaaat |
106 |
Q |
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|||||| |
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| T |
28290044 |
caaaat |
28290039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 28302949 - 28302890
Alignment:
| Q |
5 |
aaaaatgtaaaatatctaacctgagagaacagcattcagcaagagaacgccctgaaattaa |
65 |
Q |
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||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
28302949 |
aaaaatgtaaa-tatctaacctgtgagaacagcattcagtaagagaacgccctgaaattaa |
28302890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 28289632 - 28289592
Alignment:
| Q |
356 |
taatgaatggttacctgcagagcccatttttcaagattgcc |
396 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| |
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| T |
28289632 |
taatcaatggttacctgcaaagcccatttttcaagattgcc |
28289592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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