View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_100 (Length: 254)
Name: NF11835_high_100
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_100 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 45513053 - 45513299
Alignment:
| Q |
1 |
gctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaat |
100 |
Q |
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| T |
45513053 |
gctttccaaaacatgacatctcttatctatcttgatctctcatcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaat |
45513152 |
T |
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| Q |
101 |
cactctacctttctggaaataatttcacttctattccattatggttcagtcactttgagaaacttacccttcttgacctttcttacaatgggctttatgg |
200 |
Q |
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| T |
45513153 |
cactctacctttctggaaataatttcacttctattccattatggttcggtcactttgagaaacttacccttcttgacctttcttataatgggctttatgg |
45513252 |
T |
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| Q |
201 |
tcaaatacctcatgctttcacgaacttgtcatccctggttcatctca |
247 |
Q |
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| T |
45513253 |
tcaaatacctcatgctttcacgaacttgtcatccctggtgcatctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
46 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
145 |
Q |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
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| Q |
146 |
t |
146 |
Q |
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| T |
45513624 |
t |
45513624 |
T |
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