View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_high_106 (Length: 248)
Name: NF11835_high_106
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_106 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 48392533 - 48392770
Alignment:
| Q |
11 |
cagagatctaaacaatgtcaggttgggacgaaggaggcgtatactatagcgaccaagcacactcatgggacgacggccgcggcggcgaaaccgacgccac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48392533 |
cagagatctaaacaatgtcaggttgggacgaaggaggcgtatactatagcgaccaagcacactcatgggacgacggccgcggcggcgaaaccgacgccgc |
48392632 |
T |
|
| Q |
111 |
catctccaaccacaccattcttcaaaaattcaaagaattcatccgtaacttcgaaaccggtaacaatgtcttcccttacagagaaagtcttctccataat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48392633 |
catctccaaccacaccattcttcaaaaattcaaagaattcatccgtaacttcgaaaccggtaacaatgtcttcccttacagagaaagtctcctccataat |
48392732 |
T |
|
| Q |
211 |
cccaaatatcttctcgttgatatggaagatcttgactc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48392733 |
cccaaatatcttctcgttgatatggaagatcttgactc |
48392770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University