View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_109 (Length: 244)
Name: NF11835_high_109
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 39349570 - 39349380
Alignment:
| Q |
42 |
tcatttatagtgagtttggtacacttttaaagacgaaaaagaaaatatcatgaggaagtttttaatatgttatttgtatagaacttgttgaagctcatta |
141 |
Q |
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| T |
39349570 |
tcatttatagtgagtttggtacacttttaaagacgaaaaagaaaatatcatgaggaagtttttaatatgttatttgtatagaacttgttgaagctcatta |
39349471 |
T |
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| Q |
142 |
attacctgatttcaaccannnnnnnnnnnnnnnnngtagaaatcaaccacttatttttaaacggatatcttaatcaaatggtcacaggttc |
232 |
Q |
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| T |
39349470 |
attacctgatttcaaccattttgttttttggttttgtagaaatcaaccacttatttttaaacggacatcttaatcaaatggtcacatgttc |
39349380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39349619 - 39349586
Alignment:
| Q |
1 |
atttgagaatttatcatttatagtgagttccttt |
34 |
Q |
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| T |
39349619 |
atttgagaatttatcatttatagtgagttccttt |
39349586 |
T |
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