View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_110 (Length: 241)
Name: NF11835_high_110
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_110 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 46356857 - 46356635
Alignment:
| Q |
19 |
ttctttaactgctacagtcacatcttcaaaaatattttcagctatgccgtgcaaatttcccaggttcatcctagatgtacaatgtccttttccctttctg |
118 |
Q |
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| T |
46356857 |
ttctttaactgctactgtcacatcttcaaaaatattttcagccatgccgtgcaaatttcccaggttcatcctagatgtacaatgtccttttccctttctg |
46356758 |
T |
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| Q |
119 |
ttttatttcaatttaatataaattttcaactcattttagaactgttgtgtgctatgaaaataaaaaacggttggaaattcgttaatgttaattgcatagc |
218 |
Q |
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| T |
46356757 |
ttttatttcaatttaatataaattttcaactcattttagaactgttgtgtgttatgaaaataaaaaacagttggaaattcgttaatgttaattgcatagc |
46356658 |
T |
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| Q |
219 |
ttgaactgtatgttgacttcatc |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
46356657 |
ttgaactgtatgttgacttcatc |
46356635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 7177387 - 7177284
Alignment:
| Q |
19 |
ttctttaactgctacagtcacatcttcaaaaatattttcagctatgccgtgcaaatttcccaggttcatcctagatgtacaatgtccttttccctttctg |
118 |
Q |
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|||||||||| || | ||| |||||||||||||||||||||| |||| | |||||||||||||||| || | |||||| ||||| ||| |||||| || |
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| T |
7177387 |
ttctttaactacttccgtcgcatcttcaaaaatattttcagccatgcagagcaaatttcccaggtttgtcttggatgtataatgttttttcccctttatg |
7177288 |
T |
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| Q |
119 |
tttt |
122 |
Q |
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| T |
7177287 |
tttt |
7177284 |
T |
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