View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_114 (Length: 240)

Name: NF11835_high_114
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_114
NF11835_high_114
[»] chr2 (6 HSPs)
chr2 (9-240)||(21488855-21489086)
chr2 (169-229)||(15538954-15539014)
chr2 (167-229)||(28314667-28314729)
chr2 (177-230)||(37172605-37172658)
chr2 (190-230)||(23465771-23465811)
chr2 (176-229)||(30481704-30481757)
[»] chr8 (5 HSPs)
chr8 (169-230)||(32729433-32729494)
chr8 (176-229)||(38924418-38924471)
chr8 (169-228)||(34273135-34273194)
chr8 (176-226)||(33435412-33435462)
chr8 (176-229)||(33357366-33357419)
[»] chr5 (5 HSPs)
chr5 (179-229)||(35943552-35943602)
chr5 (171-226)||(23311781-23311836)
chr5 (178-226)||(31536419-31536467)
chr5 (176-240)||(14105981-14106046)
chr5 (167-235)||(12124706-12124774)
[»] chr7 (14 HSPs)
chr7 (170-230)||(35851970-35852030)
chr7 (168-235)||(25690730-25690797)
chr7 (171-229)||(16780770-16780828)
chr7 (169-234)||(101295-101360)
chr7 (173-230)||(11329506-11329563)
chr7 (176-233)||(31726654-31726711)
chr7 (169-233)||(18228286-18228350)
chr7 (176-235)||(28557251-28557310)
chr7 (168-235)||(45773212-45773279)
chr7 (169-235)||(11754691-11754757)
chr7 (176-217)||(23937770-23937811)
chr7 (169-230)||(37108932-37108993)
chr7 (176-233)||(48078593-48078650)
chr7 (176-228)||(5721703-5721755)
[»] chr4 (3 HSPs)
chr4 (178-234)||(37397965-37398021)
chr4 (168-235)||(40423318-40423385)
chr4 (187-230)||(43115610-43115653)
[»] chr3 (6 HSPs)
chr3 (170-230)||(25258075-25258135)
chr3 (169-235)||(12767332-12767398)
chr3 (176-232)||(37058994-37059050)
chr3 (176-230)||(27177339-27177393)
chr3 (176-229)||(581066-581119)
chr3 (169-226)||(50670100-50670157)
[»] scaffold0223 (1 HSPs)
scaffold0223 (177-229)||(16334-16386)
[»] chr1 (2 HSPs)
chr1 (177-236)||(5760050-5760109)
chr1 (176-229)||(24603072-24603125)
[»] chr6 (1 HSPs)
chr6 (171-230)||(22682576-22682636)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 21489086 - 21488855
Alignment:
Q  9 acatcacaatctaacaaggtagaagcgtgtcttatttctccattgtaaaaccataaatgaaaattatccttctcatttatgaaattgtccacttcctaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  21489086 acatcacaatctaacaaggtagaagcgtgtcttatttctccattgtaaaaccataaatgaaaattatccttctcatttatgaaattatccacttccttat 21488987  T
Q  109 atcagcaatcagcgacacagttaactgttcctcgacaatcttcaacgacagtaaatttctgctgacgcttttaagatcggttaaactgacttaaaaaata 208  Q
    |||||| |||||||||||||||||||||||||||  | | |||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||     
T  21488986 atcagcgatcagcgacacagttaactgttcctcggtatttttcagcgacagtgaatttttgctgacacttttaagatcggttgaactgacttaaaaaatg 21488887  T
Q  209 attgaaccgatcttaaaagtgttagcggcaat 240  Q
    ||||||||||||||||||||||||||| ||||    
T  21488886 attgaaccgatcttaaaagtgttagcgacaat 21488855  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 15539014 - 15538954
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||||| |||||||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  15539014 gctgacacttttaagatcgattgaaccgacttaaaaagtaattgaaccgatcttaaaagtg 15538954  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 28314667 - 28314729
Alignment:
Q  167 ctgctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||||||| ||||||||||||||| |||  | ||||||| | |||||||||||||||||||||    
T  28314667 ctgctgacacttttaagatcggttcaaccaatttaaaaagtgattgaaccgatcttaaaagtg 28314729  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 37172605 - 37172658
Alignment:
Q  177 ttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    ||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||    
T  37172605 ttttaagattggttgaactgacttaaaaagtgattgaaccgatgttaaaagtgt 37172658  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 23465771 - 23465811
Alignment:
Q  190 taaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  23465771 taaacttacttaaaaagtaattgaaccgatcttaaaagtgt 23465811  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 30481757 - 30481704
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||||||||| |||| || || |||||||||| ||||||| |||||||||||||    
T  30481757 cttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtg 30481704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 32729494 - 32729433
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  32729494 gctgacacttttaagatcggttgaaccgacttaaaaaataattgaactgatcttaaaagtgt 32729433  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 38924471 - 38924418
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    ||||||||||| ||| ||| |||||||||| | |||||||||||||||||||||    
T  38924471 cttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaaagtg 38924418  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 34273135 - 34273194
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagt 228  Q
    |||||| ||||||| ||||||| ||| |||||||| | | ||||||||||||||||||||    
T  34273135 gctgacacttttaaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaaagt 34273194  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 33435412 - 33435462
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaa 226  Q
    ||||||||||||||| ||| |||||||||| ||||| ||| ||||||||||    
T  33435412 cttttaagatcggttgaaccgacttaaaaagtaattaaactgatcttaaaa 33435462  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 33357366 - 33357419
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    ||||||| ||| ||||||| |  |||||||||||||||||| ||||||||||||    
T  33357366 cttttaaaatcagttaaaccggtttaaaaaataattgaaccaatcttaaaagtg 33357419  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 35943552 - 35943602
Alignment:
Q  179 ttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  35943552 ttaaaatcggttgaactgacttaaaaaataattgaaccgatcttaaaagtg 35943602  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 23311836 - 23311781
Alignment:
Q  171 tgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaa 226  Q
    |||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  23311836 tgacacttttaagattggttgaactgacttaaaaaataatttaaccgatcttaaaa 23311781  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 31536419 - 31536467
Alignment:
Q  178 tttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaa 226  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaa 31536467  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 14105981 - 14106046
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgtt-agcggcaat 240  Q
    |||||||||||||| ||||  ||||||||| | |||||||||||||||||| |||| |||||||||    
T  14105981 cttttaagatcggtcaaaccaacttaaaaagtgattgaaccgatcttaaaaatgttcagcggcaat 14106046  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 12124774 - 12124706
Alignment:
Q  167 ctgctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    |||||||| |||||||||||| ||| || |||||||||  | ||||||| ||| |||||||||| ||||    
T  12124774 ctgctgacacttttaagatcgattagaccgacttaaaagctgattgaactgattttaaaagtgtcagcg 12124706  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 35851970 - 35852030
Alignment:
Q  170 ctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    ||||| ||||||||||||||| ||| |||||| ||| | ||||||||||||||||||||||    
T  35851970 ctgacacttttaagatcggttgaaccgacttagaaagtgattgaaccgatcttaaaagtgt 35852030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 25690797 - 25690730
Alignment:
Q  168 tgctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    ||||||| ||||||||||||||| ||| | |||||||| | ||||||||||||| |||||||| ||||    
T  25690797 tgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcg 25690730  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 16780770 - 16780828
Alignment:
Q  171 tgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||| ||||||||||||||| ||  |||||||||| | |||||||||||||||||||||    
T  16780770 tgacacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtg 16780828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 101295 - 101360
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagc 234  Q
    |||||| ||||||||||||||| | |||||||||||| | ||||||| ||||| ||||||| ||||    
T  101295 gctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgatctaaaaagtgctagc 101360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 11329563 - 11329506
Alignment:
Q  173 acgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    |||||||||||||||||||||| |||||||||| | || ||| | |||||||||||||    
T  11329563 acgcttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgt 11329506  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 31726654 - 31726711
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttag 233  Q
    ||||||||||||||| ||| | ||||||| || |||||||||| ||||||||||||||    
T  31726654 cttttaagatcggttgaaccggcttaaaatatgattgaaccgaacttaaaagtgttag 31726711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 18228350 - 18228286
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttag 233  Q
    |||||| |||||| ||  |||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  18228350 gctgacacttttaggactggttaatctgacttaaaaaatgattaaaccgatcttaaaaatgttag 18228286  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 28557251 - 28557310
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    ||||||||||| ||| |||||  |||||| || |||||||||||||||||||||| ||||    
T  28557251 cttttaagatcagttgaactgggttaaaatatgattgaaccgatcttaaaagtgtcagcg 28557310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 45773279 - 45773212
Alignment:
Q  168 tgctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    |||||||||||||||||| |||| ||| | | |||||| | ||||||||||||| |||||||| ||||    
T  45773279 tgctgacgcttttaagattggttgaaccggcgtaaaaagtgattgaaccgatctaaaaagtgtcagcg 45773212  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 11754691 - 11754757
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    |||||| |||||||||| |||| ||| ||  |||||| | |||||||||||||||||||||| ||||    
T  11754691 gctgacacttttaagattggttgaaccgagataaaaagtgattgaaccgatcttaaaagtgtcagcg 11754757  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 23937811 - 23937770
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccg 217  Q
    ||||||||||||||||||| || ||||||| |||||||||||    
T  23937811 cttttaagatcggttaaaccgatttaaaaagtaattgaaccg 23937770  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 37108932 - 37108993
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    ||||| |||||||| ||| ||| ||| ||||||||| |||||||||||||||| ||| ||||    
T  37108932 gctgatgcttttaaaatcagttgaaccgacttaaaatataattgaaccgatctaaaaggtgt 37108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 48078650 - 48078593
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttag 233  Q
    ||||||||||||||| ||| |||||||||| | ||||||  |||||||||||| ||||    
T  48078650 cttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagtattag 48078593  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 5721755 - 5721703
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagt 228  Q
    ||||||||||||||| ||| || || |||| |||||||| |||||||||||||    
T  5721755 cttttaagatcggttgaaccgatttgaaaagtaattgaatcgatcttaaaagt 5721703  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 37397965 - 37398021
Alignment:
Q  178 tttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagc 234  Q
    |||||||| |||| |||||||||||||| | |||||||||||||||||| |||||||    
T  37397965 tttaagattggttgaactgacttaaaaagtgattgaaccgatcttaaaaatgttagc 37398021  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 40423318 - 40423385
Alignment:
Q  168 tgctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    ||||||| ||||||||||  ||| ||| |||||||||| | |||||||||||||||||| ||| ||||    
T  40423318 tgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcg 40423385  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 43115653 - 43115610
Alignment:
Q  187 ggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||    
T  43115653 ggttgaaccgacttaaaaaattattgaaccgatcttaaaagtgt 43115610  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 25258075 - 25258135
Alignment:
Q  170 ctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    ||||| ||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||    
T  25258075 ctgacacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagtgt 25258135  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 12767332 - 12767398
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcg 235  Q
    |||||| ||| ||||||||||| | | |||||||||| | |||||| ||||||||||||||||||||    
T  12767332 gctgacacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcg 12767398  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 37058994 - 37059050
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgtta 232  Q
    ||||||||||||||| ||  |||||||||||| |||||| ||||||||||| |||||    
T  37058994 cttttaagatcggttgaatcgacttaaaaaatgattgaatcgatcttaaaaatgtta 37059050  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 27177393 - 27177339
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgt 230  Q
    ||||||||||||||| | |  ||||||||||| ||||||||||||| ||||||||    
T  27177393 cttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagtgt 27177339  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 581066 - 581119
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    ||||||||||||||| ||| |||||||||| | ||||||| | |||||||||||    
T  581066 cttttaagatcggttgaacagacttaaaaagttattgaacgggtcttaaaagtg 581119  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 50670100 - 50670157
Alignment:
Q  169 gctgacgcttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaa 226  Q
    |||||| ||||||| ||||||| |||| || |||||||| |||||| |||||||||||    
T  50670100 gctgacacttttaaaatcggttgaacttacgtaaaaaatgattgaatcgatcttaaaa 50670157  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 16386 - 16334
Alignment:
Q  177 ttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    |||||||||||||| ||| || ||||||| ||||||||||| |||||||||||    
T  16386 ttttaagatcggttgaaccgatttaaaaagtaattgaaccggtcttaaaagtg 16334  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 5760109 - 5760050
Alignment:
Q  177 ttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtgttagcgg 236  Q
    |||||||||||||| ||  |||||||||| | |||||| ||||||||||||| |||||||    
T  5760109 ttttaagatcggttgaagcgacttaaaaagtgattgaagcgatcttaaaagttttagcgg 5760050  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 24603072 - 24603125
Alignment:
Q  176 cttttaagatcggttaaactgacttaaaaaataattgaaccgatcttaaaagtg 229  Q
    ||||||||||||||| |||   |||||||||| | |||||||||||||||||||    
T  24603072 cttttaagatcggttgaaccagcttaaaaaattagtgaaccgatcttaaaagtg 24603125  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 22682636 - 22682576
Alignment:
Q  171 tgacgcttttaagatcggttaaactgacttaaaaaataattgaac-cgatcttaaaagtgt 230  Q
    |||| ||||||||||||||| |||  ||||||||||| |||||||  ||||||||||||||    
T  22682636 tgacacttttaagatcggttgaaccaacttaaaaaatgattgaacaggatcttaaaagtgt 22682576  T

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