View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_116 (Length: 239)
Name: NF11835_high_116
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_116 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 55160033 - 55159884
Alignment:
| Q |
75 |
ctaatctaatatttttgtcaaacttaaataaccnnnnnnngtatttaacctacttttaatatatttgttatcttaattaacgttcatgacatttgttgac |
174 |
Q |
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| T |
55160033 |
ctaatctaatatttttgtcaaacttaaataaccaaaaaaagtatttaacctacttttaatatatttgttatcttaattaacgttcatgacatttgttgac |
55159934 |
T |
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| Q |
175 |
atttctctttctctatcaatcactcacacgagacaaaataggactaaagt |
224 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
55159933 |
atttctctttctctgtgaatcactcacacgagacaaaataggactaaagt |
55159884 |
T |
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