View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_122 (Length: 229)
Name: NF11835_high_122
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_122 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 48393120 - 48392927
Alignment:
| Q |
5 |
caattaaaaaccataataaacaattaaacacaaaattagttataatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaaga |
104 |
Q |
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| T |
48393120 |
caattaaaaaccataataaacaattaaacacaaaattagttataatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaaga |
48393021 |
T |
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| Q |
105 |
atctgaacatcaccaggagcagcatcttccatatcaccagtatctccagcaaccttcgtcttcaaactcaccaaaacctgcgccgccgcagttt |
198 |
Q |
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| T |
48393020 |
atctgaacatcaccaggagcagcatcttccatatcaccagtatctccagcaaccttcgtcttcaaactcaccaaaacctgcgccgccgcagttt |
48392927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 36086035 - 36086118
Alignment:
| Q |
48 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatctgaacatcaccaggagcagcatct |
131 |
Q |
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|||| ||||||| |||| |||||||| ||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
36086035 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaagaatctaaacatcgccaggagcagcatct |
36086118 |
T |
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