View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_123 (Length: 229)

Name: NF11835_high_123
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_123
NF11835_high_123
[»] chr1 (5 HSPs)
chr1 (1-229)||(37162-37372)
chr1 (115-162)||(21516253-21516300)
chr1 (111-161)||(24153158-24153208)
chr1 (113-161)||(608406-608454)
chr1 (67-115)||(4033971-4034019)
[»] chr3 (3 HSPs)
chr3 (43-117)||(24281113-24281187)
chr3 (111-154)||(23785141-23785184)
chr3 (115-155)||(34857398-34857438)
[»] chr4 (3 HSPs)
chr4 (64-116)||(4071945-4071997)
chr4 (67-115)||(2996641-2996689)
chr4 (121-161)||(8703771-8703811)
[»] chr5 (3 HSPs)
chr5 (111-162)||(7097342-7097393)
chr5 (66-115)||(38728470-38728519)
chr5 (89-117)||(14295572-14295600)
[»] chr2 (1 HSPs)
chr2 (111-162)||(3102573-3102624)
[»] chr7 (2 HSPs)
chr7 (122-159)||(39334066-39334103)
chr7 (111-163)||(8680874-8680926)
[»] chr8 (2 HSPs)
chr8 (126-162)||(5383039-5383075)
chr8 (111-155)||(43907938-43907982)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37372 - 37162
Alignment:
Q  1 tcaaagaaataaaacaggcttagggcctgtttgagtatatttacttatttgagtatatttaccaatataaacacttttgtgattgttagagagagcttat 100  Q
    ||||||||||||||||||||||||||||||||||     ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37372 tcaaagaaataaaacaggcttagggcctgtttga-----tttacttatttgagtatatctactaatataaacacttttgtgattgttagagagagcttat 37278  T
Q  101 gaaaacagcttatgataaacatttatgttataagcatttaattaagctgtttatcgaaacagacccttcatacagaaaacatggtcatatagagaagcta 200  Q
    ||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37277 ga-------------taaacatttatgttataagcatttaattaagctgtttatcgaaacagacccttcatacagaaaacatggtcatatagagaagcta 37191  T
Q  201 aatttaaaaacagaaaggaaaagatgcat 229  Q
    |||||||||||||||||||||||||||||    
T  37190 aatttaaaaacagaaaggaaaagatgcat 37162  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 21516300 - 21516253
Alignment:
Q  115 ataaacatttatgttataagcatttaattaagctgtttatcgaaacag 162  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||    
T  21516300 ataaacatttatgttataagcgtttaattaagttgtttatccaaacag 21516253  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 24153208 - 24153158
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttatcgaaaca 161  Q
    |||||||||||| |||||||||||  |||||||||| |||||||| |||||    
T  24153208 tatgataaacatatatgttataagtgtttaattaagttgtttatctaaaca 24153158  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 608406 - 608454
Alignment:
Q  113 tgataaacatttatgttataagcatttaattaagctgtttatcgaaaca 161  Q
    ||||||| |||||||||||||||  ||||||||| ||||||| ||||||    
T  608406 tgataaatatttatgttataagcgcttaattaagttgtttattgaaaca 608454  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 4033971 - 4034019
Alignment:
Q  67 ataaacacttttgtgattgttagagagagcttatgaaaacagcttatga 115  Q
    |||||||||| || ||||||| ||||||||||||||||| | |||||||    
T  4033971 ataaacacttgtgagattgtttgagagagcttatgaaaataacttatga 4034019  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 24281187 - 24281113
Alignment:
Q  43 acttatttgagtatatttaccaatataaacacttttgtgattgttagagagagcttatgaaaacagcttatgata 117  Q
    |||||||||||| ||| |||   ||||| ||||| |||||||||| ||||||||||||||||||| |||||||||    
T  24281187 acttatttgagtctatctactggtataagcacttgtgtgattgtttgagagagcttatgaaaacaacttatgata 24281113  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 23785184 - 23785141
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttat 154  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||    
T  23785184 tatgataaacatttatgctataagcacttaattaagttgtttat 23785141  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 34857438 - 34857398
Alignment:
Q  115 ataaacatttatgttataagcatttaattaagctgtttatc 155  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  34857438 ataaatatttatgttataagcacttaattaagttgtttatc 34857398  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 4071997 - 4071945
Alignment:
Q  64 aatataaacacttttgtgattgttagagagagcttatgaaaacagcttatgat 116  Q
    ||||||| ||||| || || |||| ||||||||||||||||||||||||||||    
T  4071997 aatataagcacttgtgagactgtttgagagagcttatgaaaacagcttatgat 4071945  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 2996689 - 2996641
Alignment:
Q  67 ataaacacttttgtgattgttagagagagcttatgaaaacagcttatga 115  Q
    |||| |||||||| || |||| ||||||||||||||||||| |||||||    
T  2996689 ataagcacttttgagactgtttgagagagcttatgaaaacaacttatga 2996641  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 8703771 - 8703811
Alignment:
Q  121 atttatgttataagcatttaattaagctgtttatcgaaaca 161  Q
    |||||||||||||||| ||||||||||||||| || |||||    
T  8703771 atttatgttataagcacttaattaagctgtttgtcaaaaca 8703811  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 7097393 - 7097342
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttatcgaaacag 162  Q
    |||||||| |||||||| ||||||||| ||||||||||||||| | ||||||    
T  7097393 tatgataagcatttatgctataagcatataattaagctgtttagccaaacag 7097342  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 38728519 - 38728470
Alignment:
Q  66 tataaacacttttgtgattgttagagagagcttatgaaaacagcttatga 115  Q
    ||||||||| | |||||||||| | ||||||||||||||| |||||||||    
T  38728519 tataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatga 38728470  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 14295600 - 14295572
Alignment:
Q  89 gagagagcttatgaaaacagcttatgata 117  Q
    |||||||||||||||||||||||||||||    
T  14295600 gagagagcttatgaaaacagcttatgata 14295572  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 3102624 - 3102573
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttatcgaaacag 162  Q
    ||||||||||||||||||| |||||  ||||| |||||||||||| ||||||    
T  3102624 tatgataaacatttatgttttaagcgcttaataaagctgtttatccaaacag 3102573  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 39334103 - 39334066
Alignment:
Q  122 tttatgttataagcatttaattaagctgtttatcgaaa 159  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  39334103 tttattttataagcaattaattaagctgtttatcgaaa 39334066  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 8680926 - 8680874
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttatcgaaacaga 163  Q
    |||||||||||| |||| ||||||  ||||||| ||||||||||| |||||||    
T  8680926 tatgataaacatctatgctataagtgtttaattgagctgtttatccaaacaga 8680874  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 5383075 - 5383039
Alignment:
Q  126 tgttataagcatttaattaagctgtttatcgaaacag 162  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  5383075 tgttataagtatttaattaagctgtttatccaaacag 5383039  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 43907938 - 43907982
Alignment:
Q  111 tatgataaacatttatgttataagcatttaattaagctgtttatc 155  Q
    ||||||||||||||||| ||||||  |||||||||| ||||||||    
T  43907938 tatgataaacatttatgatataagggtttaattaagatgtttatc 43907982  T

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