View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_126 (Length: 224)
Name: NF11835_high_126
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_126 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 35814762 - 35814848
Alignment:
| Q |
17 |
gagactaacccctttgccggaggagctattcgggtttaccttcgtgaggtgaaggatagtcagcaaaaggcaagagggatcccatat |
103 |
Q |
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| T |
35814762 |
gagactaacccctttgccggaggagctattcgggtttaccttcgtgaggtgaaggatagtcagcaaaaggcaagagggatcccatat |
35814848 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 35814875 - 35814955
Alignment:
| Q |
130 |
ttaccaaattaaagggactactcaagcagatcaaggtgcttgtgtcaagcaacaagattcttataattgagatatatatat |
210 |
Q |
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| T |
35814875 |
ttaccaaattaaagggactactcaagcagatcaaggtgcttgtgtcaagcaacaagattcttataattgagatatatatat |
35814955 |
T |
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