View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_128 (Length: 223)
Name: NF11835_high_128
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_128 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39856698 - 39856494
Alignment:
| Q |
1 |
aaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaac |
100 |
Q |
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| T |
39856698 |
aaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaac |
39856599 |
T |
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| Q |
101 |
aaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaag |
200 |
Q |
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| T |
39856598 |
aaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaag |
39856499 |
T |
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| Q |
201 |
ggatt |
205 |
Q |
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||||| |
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| T |
39856498 |
ggatt |
39856494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 39897150 - 39897068
Alignment:
| Q |
123 |
tcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggatt |
205 |
Q |
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| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaagggatt |
39897068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 39864020 - 39863909
Alignment:
| Q |
46 |
tgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaatt |
145 |
Q |
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| T |
39864020 |
tgaagctcaacagtcaaaagtggacttagagaccactaatgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaatt |
39863921 |
T |
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| Q |
146 |
gatgctatgata |
157 |
Q |
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| T |
39863920 |
aatgatatgata |
39863909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 38980370 - 38980448
Alignment:
| Q |
127 |
caaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacagagtgttatcagaagggatt |
205 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| | | ||| ||||||| ||||||||||||||| |
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| T |
38980370 |
caaagacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggatt |
38980448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 39737484 - 39737602
Alignment:
| Q |
87 |
atgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcgacag |
186 |
Q |
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|||||||||||| |||| ||||||||| |||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||||||| || || ||||| |
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| T |
39737484 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgacag |
39737583 |
T |
|
| Q |
187 |
agtgttatcagaagggatt |
205 |
Q |
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||| ||||| ||||||||| |
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| T |
39737584 |
agttttatcggaagggatt |
39737602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 39863840 - 39863698
Alignment:
| Q |
61 |
aaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagat |
160 |
Q |
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||||||||| |||||||||||| | |||||||| ||| |||||||| | ||| | || ||||| |||||||||||| |||||||||||||||| | |
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| T |
39863840 |
aaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgataggt |
39863741 |
T |
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| Q |
161 |
gaggatgtcattggtgcgatcgacagagtgttatcagaaggga |
203 |
Q |
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|||||||| |||| ||| ||||||| ||| ||||| ||||||| |
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| T |
39863740 |
gaggatgttattgctgcaatcgacaaagttttatccgaaggga |
39863698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39737413 - 39737477
Alignment:
| Q |
1 |
aaacaaaattattatagctgaagaaaggaatgttgtcaaaaatactgaagctcaacagtcaaaag |
65 |
Q |
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|||| ||| ||||||| | ||||||| ||||||| |||||| | |||||||||||||||||||| |
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| T |
39737413 |
aaacgaaaatattatatccgaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaag |
39737477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 32827097 - 32826976
Alignment:
| Q |
84 |
atgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagatgaggatgtcattggtgcgatcga |
183 |
Q |
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||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||| || || |
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| T |
32827097 |
atgattaaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgatagatgaggacgttgttgctgcaattga |
32826998 |
T |
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| Q |
184 |
cagagtgttatcagaagggatt |
205 |
Q |
| |
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|||||| |||| |||||||||| |
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| T |
32826997 |
cagagttttattagaagggatt |
32826976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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