View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_134 (Length: 209)
Name: NF11835_high_134
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_134 |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 16268 - 16440
Alignment:
| Q |
19 |
acttaaacactttt-ttaattggaagaaacatatgtgttccaccattttaagtgaattatatttttaaagtgtaggattcacattaatttcactcaataa |
117 |
Q |
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| T |
16268 |
acttaaacactttttttaattggaagaaacatatgtgttccaccattttaagtgaattatatttttaaagtgtaggattcacattaatttcactcaataa |
16367 |
T |
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| Q |
118 |
aattgagtgtgtttaaatgaatgctgaaaaaagttcattagtaatactcctcttaagacatccttaagacacc |
190 |
Q |
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| T |
16368 |
aattgagtgtgtttaaatgaatgctgaaaaaagttcattaataatactcctcttaagacatccttaagacacc |
16440 |
T |
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Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 44402372 - 44402224
Alignment:
| Q |
19 |
acttaaacactttttt-aattggaagaaacatatgtgttccaccattttaagtgaattatatttttaaagtgtaggattcacattaatttcactcaataa |
117 |
Q |
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| T |
44402372 |
acttaaacactttttttaattggaagaaacatatgtgttccaccattttaaatgaattatatttttaaagtgtaggattcacattaatttcactcaataa |
44402273 |
T |
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| Q |
118 |
aattgagtgtgtttaaatgaatgctgaaaaaagttcattagtaatactc |
166 |
Q |
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| T |
44402272 |
aattgagtgtgtttaaatgaatgctgaaaaaagttgattagtaatactc |
44402224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 44402081 - 44402053
Alignment:
| Q |
162 |
tactcctcttaagacatccttaagacacc |
190 |
Q |
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| T |
44402081 |
tactcctcttaagacatccttaagacacc |
44402053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 44135419 - 44135378
Alignment:
| Q |
78 |
atttttaaagtgtaggattcacattaatttcactcaataaaa |
119 |
Q |
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| T |
44135419 |
atttttaaagtgtatgattcacattagtttcattcaataaaa |
44135378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 50055901 - 50055860
Alignment:
| Q |
78 |
atttttaaagtgtaggattcacattaatttcactcaataaaa |
119 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
50055901 |
atttttaaagtgtatgattcacattagtttcattcaataaaa |
50055860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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