View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_high_17 (Length: 521)
Name: NF11835_high_17
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 43062235 - 43062739
Alignment:
| Q |
1 |
tcaattgatttgagctaaaaataagaaattcgagatgcagagtcaaacctacactaattagaaaagctaaattcttattttcaaatgggaatcatgcata |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| ||| ||||||| |||| |||||||||| ||||||||||||||| ||||| || ||||| || |
|
|
| T |
43062235 |
tcaattgatttaagctaaaaataagaaatttgagatgtagattcaaacccacacgaattagaaaaactaaattcttatttttaaatgtgattcatgtatg |
43062334 |
T |
|
| Q |
101 |
taggttgatttgaatgacctcatgatccaatctaagtcgaatattttttagtagtttgagtcaaatcagaatcaatccaatcaaacttgaagtggtttaa |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
43062335 |
taggtcgattcgaatgacctcatgatccaatctaagtcgaatattttttagtaattttagtcaaattaaaatcaatccaatcaaacttgaagtggtttaa |
43062434 |
T |
|
| Q |
201 |
tttagggtaatgaatttatgattctcaactctctacatagaccattcaaagaaaacactctcatcgcaattaaccactattcgttgtcttacggtagtta |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43062435 |
tttgaggtaatgaatttatgattctcaactctctacacagaccattcaaagaaaatacactcatcgcaattaaccactattcgttgtcttacggtagtta |
43062534 |
T |
|
| Q |
301 |
attgtcgttcgctccactattgttggatccatagtttctaaaccaaatgtgaatgtcactgacaaagatattacactgatgaatgttgtcgttgttgttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43062535 |
attgtcgttcgctccactattgttggatccatagtttctaaaccaaatgtgaatgtcactaacaaagatattacactgatgaatgttgtcgttgttgttt |
43062634 |
T |
|
| Q |
401 |
tccctaaaattaccacatcaatttgttagttttatattgctaaaaacgttagaactaattaaatgcatcacaggctgcagagtgaaatctaaggatgtca |
500 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
43062635 |
tccctaaaattaccacatcaacttgttaattttatattgctaaaaacattagaac----taaatgcatgacaagctccagagtgaaatctaaggatgtca |
43062730 |
T |
|
| Q |
501 |
aagttgatg |
509 |
Q |
| |
|
|||| |||| |
|
|
| T |
43062731 |
aagtggatg |
43062739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University