View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_high_22 (Length: 487)
Name: NF11835_high_22
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_22 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 41722702 - 41723170
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722702 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
41722801 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722802 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacata |
41722901 |
T |
|
| Q |
201 |
agccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttaccattcagattttcggtgccaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722902 |
agccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttaccattcagattttcggtgccaaca |
41723001 |
T |
|
| Q |
301 |
ttgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtccctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723002 |
ttgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtccctt |
41723101 |
T |
|
| Q |
401 |
gcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723102 |
gcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
41723170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 179 - 469
Target Start/End: Original strand, 41718154 - 41718444
Alignment:
| Q |
179 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41718154 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc |
41718253 |
T |
|
| Q |
279 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718254 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
41718353 |
T |
|
| Q |
379 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718354 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
41718444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 34359482 - 34359667
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
34359482 |
gtggatatgcaaaagattcacaccaatgataacctagcggatgtaatgacaaagccgatcaacgctgacaagtttatatggtgtcgatcctcgtatggcc |
34359581 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359582 |
tattggaaacgtagcaactggagttggcaaggtagagatactttgaatgctcacaaaagtgactttaagtgggagattgtgaacat |
34359667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 469
Target Start/End: Original strand, 34352226 - 34352282
Alignment:
| Q |
413 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352226 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
34352282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 469
Target Start/End: Original strand, 34359934 - 34359990
Alignment:
| Q |
413 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359934 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
34359990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 468
Target Start/End: Complemental strand, 29585640 - 29585584
Alignment:
| Q |
413 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagag |
468 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
29585640 |
tcatcccaaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagag |
29585584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 48697846 - 48697661
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697846 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
48697747 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697746 |
ctattggaaacgtagcaaccgaagtcggcaaggtagagagattttgagagctcacaaaagtgactttaagtgggagattgtgaaca |
48697661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30946208 - 30946023
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946208 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacgctgataagtttgtatggtgtcgatcctcgtatggc |
30946109 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaaca |
186 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30946108 |
ctattggaaacgtagcaaccgaagtcggtaaggtagagagattttgagagctcacaaaagtgactttaagtgggagactgtgaaca |
30946023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 42270196 - 42270390
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
42270196 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc |
42270295 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270296 |
tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
42270390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 48702228 - 48702104
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
444 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702228 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
48702129 |
T |
|
| Q |
445 |
taaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48702128 |
taaagcttgtttagatagtgagaga |
48702104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 48697539 - 48697415
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
444 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697539 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag |
48697440 |
T |
|
| Q |
445 |
taaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48697439 |
taaagcttgtttagatagtgagaga |
48697415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 24520363 - 24520308
Alignment:
| Q |
414 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520363 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
24520308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
443 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30945901 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
30945803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 42265883 - 42265937
Alignment:
| Q |
415 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265883 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
42265937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 42270602 - 42270656
Alignment:
| Q |
415 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270602 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
42270656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac |
435 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30950607 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac |
30950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 2003182 - 2003267
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||| || ||| ||||||||||||||| |
|
|
| T |
2003182 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgttgacaaatttacatggtgtcgatcctc |
2003267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
| Q |
229 |
ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc |
322 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| ||||| ||||| |||| | ||||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
48781266 |
ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc |
48781360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 54545438 - 54545632
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
54545438 |
gtggatatgcagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
54545537 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
196 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545538 |
tattggaaacatagcaactgaagttggcaaggtagagaggctttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
54545632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 5819299 - 5819102
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
5819299 |
gtggatatgcaaaagattcacactaatgataacctagcagttgtaatgacaaagccgatcaacactgacaagtttatatggcgtcgatcctcgtatggcc |
5819200 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819199 |
tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtaactttaagtgggagattgtgaacatgtgtgaacacat |
5819102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 458
Target Start/End: Complemental strand, 2817658 - 2817545
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
444 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817658 |
ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
2817559 |
T |
|
| Q |
445 |
taaagcttgtttag |
458 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
2817558 |
taaaacttgtttag |
2817545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 5818852 - 5818796
Alignment:
| Q |
413 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818852 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
5818796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 5823613 - 5823558
Alignment:
| Q |
414 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823613 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
5823558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 42589352 - 42589389
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42589352 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
42589389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 4e-79; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 26976917 - 26976720
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
26976917 |
gtggatatgcaaaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
26976818 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976817 |
tattggaaacgtagcaactgaagttggcaaagtagagaaactttgaatgctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaacacat |
26976720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 27874733 - 27874539
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | |||||||| |
|
|
| T |
27874733 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatctttgtatggcc |
27874634 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874633 |
tattggaaacgtagcaactagagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
27874539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18967360 - 18967543
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| |||||| |||||||||||||||| |||||| |
|
|
| T |
18967360 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtgatgacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc |
18967459 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
|||||| |||| ||||||| || | || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18967460 |
ctattgaaaacatagcaacatgaatgggtaaggtagagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
18967543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 26976470 - 26976414
Alignment:
| Q |
413 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976470 |
tcatcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
26976414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 469
Target Start/End: Original strand, 1234680 - 1234735
Alignment:
| Q |
414 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234680 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
1234735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 27874327 - 27874273
Alignment:
| Q |
415 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874327 |
atcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
27874273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
443 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27879134 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
27879036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 21966493 - 21966604
Alignment:
| Q |
71 |
aagtttgtatggtgtcgatcctcgtatggcctattggaaacgtagcaact-ggagttggcaaggtagagagattttggaagctcacaaaagtgactttaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| || || ||||||||| || ||| |
|
|
| T |
21966493 |
aagtttgtatggtgtcgatcctcgtatg------ttgaaacgtagcaataaggagttggcaaggtagagagattttgaaatcttacaaaagtggctgtaa |
21966586 |
T |
|
| Q |
170 |
gtgggagattgtgaacat |
187 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
21966587 |
gtgggatattgtgaacat |
21966604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 30968569 - 30968629
Alignment:
| Q |
127 |
ggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacat |
187 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968569 |
ggcaaggtagagagattttgagtgctcacaaaagtgactttaagtgggagattgtgaacat |
30968629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 1472378 - 1472341
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1472378 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
1472341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1472483 - 1472398
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||||||||||| |
|
|
| T |
1472483 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtcgatcctc |
1472398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 9440115 - 9439921
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
9440115 |
gtggatatgcagaagattcacactaatgataacctagcagatgcaatgacaaagtcgatcaacactgacaagtttatatggtgtcgatcttcgtatggcc |
9440016 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440015 |
tattggaaacgtagcaactggagttggcaaggtagagagactttgaatactcacaaaagtgactttaagtgggagattgtgaacatgtgtgaaca |
9439921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 9439710 - 9439655
Alignment:
| Q |
414 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439710 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
9439655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 414 - 469
Target Start/End: Complemental strand, 9444430 - 9444375
Alignment:
| Q |
414 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444430 |
catcccaaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagaga |
9444375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 24594404 - 24594367
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24594404 |
tcacaaaagtgactttaagtgggagattgtgaagatgt |
24594367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 24594509 - 24594424
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
|||||||| ||||||||||| || ||| |||||||||| ||||||||| | ||||| |||| || ||| ||||||| ||||||| |
|
|
| T |
24594509 |
atgcagaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatgctgacaaatttacatggtgtagatcctc |
24594424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 829772 - 829958
Alignment:
| Q |
2 |
gtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcc |
101 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
829772 |
gtggatatgtagaagattcacactaatgataacctagcagatgtaatgacaaagccgatcaacactgacaagtttatatggtgtcgatcctcgtatggcc |
829871 |
T |
|
| Q |
102 |
tattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
829872 |
tattggaaacatagcaactggagttggcaaggtagagagactttgaatgctcacaaaagtagctttaagtgggatattgtgaacatg |
829958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 28715370 - 28715550
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggcctattgg |
107 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
28715370 |
atgcataagattcacaccaatgataacctagcagatgtaatgacaaagtcgatcaatgctgacaagtttctatagtgtcgatcctcatatggcctattga |
28715469 |
T |
|
| Q |
108 |
aaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatg |
188 |
Q |
| |
|
||| |||||||| | ||||||| |||||||||||||||| | || | ||| || ||||||||||||||||||||||||| |
|
|
| T |
28715470 |
aaatgtagcaacggaagttggcgaggtagagagattttgaattctaaaaaatgtagctttaagtgggagattgtgaacatg |
28715550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 5199062 - 5198938
Alignment:
| Q |
345 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
444 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199062 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
5198963 |
T |
|
| Q |
445 |
taaagcttgtttagatagtgagaga |
469 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5198962 |
taaagcttgtttagatagtgagaga |
5198938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 13840947 - 13840763
Alignment:
| Q |
9 |
tgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcct----cgtatggcctat |
104 |
Q |
| |
|
||||||||||||| || | |||||| ||| | ||||| ||||||| |||||||| || |||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
13840947 |
tgcagaagattcagacaagtgataacctaacggatgtggtgacaaaaccgatcaatgctaataagtttgtatggcgtcgatcctgggaagtatgacctat |
13840848 |
T |
|
| Q |
105 |
tggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgt |
189 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
13840847 |
tggaaacatagcaacaagagttggcaaggcagagaaattttagaagctcacaaaagtagatttaagtgagagattgtaaacatgt |
13840763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28060 - 27877
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| || ||||| || ||||| |||| |||||| |||||||||||||||| |||||| |
|
|
| T |
28060 |
tgtggacatgcagaagattcacaccaatgataatctagtagatgtgattacaaaaccaatcaatgctgacaagtttatatggtgtcgatcctcctatggc |
27961 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27960 |
ctattggaaacgtagcaacatgaatgggcaaggtaaagagattttggaagctcgcaaaagtagctttaagtgggagattgtgaa |
27877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2324139 - 2323956
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctcgtatggc |
100 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| || |||||| ||||||||||||| |||||||| |
|
|
| T |
2324139 |
tgtggatatgcagaagatccacaccaatgataccctagcagatgtgatgacaaagccaatcaatgctaccaagtttatatggtgtcgatcatcgtatgga |
2324040 |
T |
|
| Q |
101 |
ctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2324039 |
ctattggaaacgtagcaacatgaatgggcaaggtagagagattttggaagctcacaaaagtggctttaagtgggagattgtgaa |
2323956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22510209 - 22510398
Alignment:
| Q |
1 |
tgtggacatgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccga-tcaacactgataagtttgtatggtgtcgatcctcgtatgg |
99 |
Q |
| |
|
|||||| |||| ||||||||| || ||||||| | ||||||||| |||| |||| | | |||| | |||||||||| ||||||||| |||| | ||| |
|
|
| T |
22510209 |
tgtggatatgccgaagattcaaactgatgataaccaagcagatgtgatgaaaaagtctaatcaatattgataagtttatatggtgtcaatccctctgtgg |
22510308 |
T |
|
| Q |
100 |
cctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaacatgtgt |
191 |
Q |
| |
|
|||||| |||| ||| ||| ||||||||||||||||||| |||||| |||||| ||||| | |||||| | ||||| |||||||||||| |
|
|
| T |
22510309 |
cctattcaaaacatagaaacaggagttggcaaggtagagatattttgaaagctcccaaaaatagctttaatt--gagatagtgaacatgtgt |
22510398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 7504781 - 7504696
Alignment:
| Q |
8 |
atgcagaagattcacaccaatgataatctagcagatgtaatgacaaagccgatcaacactgataagtttgtatggtgtcgatcctc |
93 |
Q |
| |
|
||||| || ||||||||||| || ||| |||||||||| ||||||||| | ||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
7504781 |
atgcaaaaaattcacaccaaagacaatttagcagatgttatgacaaagtcaatcaatactgacaaatttacatggtgtcgatcctc |
7504696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 7504676 - 7504639
Alignment:
| Q |
152 |
tcacaaaagtgactttaagtgggagattgtgaacatgt |
189 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
7504676 |
tcacaaaagtaactttaagtgggagattgtgaagatgt |
7504639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 41413523 - 41413422
Alignment:
| Q |
85 |
tcgatcctcgtatggcctattggaaacgtagcaactggagttggcaaggtagagagattttggaagctcacaaaagtgactttaagtgggagattgtgaa |
184 |
Q |
| |
|
||||| ||||| ||| ||||| ||||| ||||||| || | ||||||| ||||| |||||| |||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
41413523 |
tcgattctcgtttggtctattagaaacatagcaacaagaatgggcaaggcagagatattttgaaagctcgcaaaagtagttttaaatggaagattgtgaa |
41413424 |
T |
|
| Q |
185 |
ca |
186 |
Q |
| |
|
|| |
|
|
| T |
41413423 |
ca |
41413422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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