View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_23 (Length: 484)
Name: NF11835_high_23
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_23 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 5825 - 6297
Alignment:
| Q |
17 |
caaaagctaagcgttaaagtctcagcttccacaccttctcctccttctcctacaccaccta---------------catctactcctcctacatcaggaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
5825 |
caaaagctaagcgttaaagtctcagcttccacaccttcacctccttctcctactccacctacatctactcctcctacatctactcctcctacatcaggaa |
5924 |
T |
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| Q |
102 |
ctactcctactccacctaccaacggaggaacaccttcgccgtcatctcccactgggcccgatgcaactcctccatcaccaggctcagctgctactctcgt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5925 |
ctactcctactccacctaccaacggaggaacaccttcaccgtcatctcccactgggcccgatgcaactcctccatcaccaggctcagctactactctcgt |
6024 |
T |
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| Q |
202 |
tgctacgttccctgttctcattgcggttatcatgaacttattggtctagactttagcttttggggaaagtgttgctatttttgtatagttattttcggta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6025 |
tgctacgttccctgttctcattgcggttatcatgaacttattggtctagactttagcttttgggggaagtgttgctatttttgtatagttattttcggta |
6124 |
T |
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| Q |
302 |
tacatggttatttaaaatttcggcttgatgtgtttgcttgactttagtactatttgatatacatattgggtggcctcattgttagtctttgactttgtat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6125 |
tacatggttatttaaaatttcggcttgatgtgtttgcttgactttagtactatttgatatacatattgggtggcctcattgttagtctttgactttgtat |
6224 |
T |
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| Q |
402 |
cagaataaatttgcctcattagaattgattgttttgtcgtgaatattgattgattaataaaagttgtcctatg |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6225 |
cagaataaatttgcctcattagaattgattgttttgtcgtgaatattgattgattaataaaagttgtcctatg |
6297 |
T |
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