View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_3 (Length: 768)

Name: NF11835_high_3
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_3
NF11835_high_3
[»] chr6 (6 HSPs)
chr6 (14-177)||(5135004-5135167)
chr6 (18-177)||(5099736-5099904)
chr6 (24-175)||(5057969-5058132)
chr6 (686-751)||(5178009-5178074)
chr6 (702-751)||(5279834-5279883)
chr6 (654-751)||(5688831-5688928)
[»] chr2 (2 HSPs)
chr2 (174-288)||(30975250-30975364)
chr2 (304-346)||(30975414-30975456)
[»] chr5 (1 HSPs)
chr5 (174-236)||(19909626-19909688)
[»] chr4 (2 HSPs)
chr4 (511-584)||(25569268-25569341)
chr4 (304-346)||(15856545-15856587)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 2e-82; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 5135167 - 5135004
Alignment:
Q  14 agaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5135167 agaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttc 5135068  T
Q  114 aactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag 177  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  5135067 aactatgtactgagtggtgactaacagtgtcatagtcgtgattcgggttaaaagctgcttatag 5135004  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 5099904 - 5099736
Alignment:
Q  18 gaggagtttgcagaaaccatgggagacagcatc---ctgatactgaaatgtgat------tataagttgcattaggcgacgctaaaagctgaacaatctg 108  Q
    ||||||||||||||||||||||||| |||||||   ||||||||||||||||||      ||||||||| ||||||||||||||||||||||| ||||||    
T  5099904 gaggagtttgcagaaaccatgggaggcagcatcatcctgatactgaaatgtgatgcgtattataagttgtattaggcgacgctaaaagctgaataatctg 5099805  T
Q  109 gcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttatag 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5099804 gcttcaactatgtacttagtggtggctaacagtgtcatagtcgtgattcgggttaaaagctgcttatag 5099736  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 5057969 - 5058132
Alignment:
Q  24 tttgcagaaaccatgggagacagcatcctgatactgaaatgtg------attataagttgc-------attaggcgacgctaaaagctgaacaatctggc 110  Q
    ||||||||||||||||| | |||||||||||||||||||||||      ||||||||| ||       |||||| |||| ||||||||||||||||||||    
T  5057969 tttgcagaaaccatgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacattaggtgacgataaaagctgaacaatctggc 5058068  T
Q  111 ttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttat 175  Q
    |||||||||||| | |||||||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  5058069 ttcaactatgtatttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttat 5058132  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 751
Target Start/End: Complemental strand, 5178074 - 5178009
Alignment:
Q  686 cttgttctcgacatttctccatttttgctccaattggttgatcatatacaagataaactattgttt 751  Q
    |||||||| | |||| |||||||||| |||||||||||| ||||||||| ||||||||| ||||||    
T  5178074 cttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttt 5178009  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 751
Target Start/End: Complemental strand, 5279883 - 5279834
Alignment:
Q  702 ctccatttttgctccaattggttgatcatatacaagataaactattgttt 751  Q
    |||||||||| |||||||||||| ||||||||| ||||||||| ||||||    
T  5279883 ctccattttttctccaattggttcatcatatacgagataaactgttgttt 5279834  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 751
Target Start/End: Original strand, 5688831 - 5688928
Alignment:
Q  654 atcaccactactaagcacaatatcannnnnnncttgttctcgacatttctccatttttgctccaattggttgatcatatacaagataaactattgttt 751  Q
    |||||||||||||  ||||||||||       |||||||| |||||| |||||| ||| | | |||||||| ||||||||| ||||||||| ||||||    
T  5688831 atcaccactactacacacaatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttt 5688928  T

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Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
Q  174 atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac 273  Q
    ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||  | ||| |||||||||||||| ||||||||||||||    
T  30975250 atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac 30975349  T
Q  274 atcaaatttcgaagg 288  Q
    |||||||||| ||||    
T  30975350 atcaaatttcaaagg 30975364  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 30975414 - 30975456
Alignment:
Q  304 actctcaattattcaaaatagccaaccaactatacacactata 346  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  30975414 actcacaattgttcaaaatagccaaccaactatacacattata 30975456  T

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Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
Q  174 atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat 236  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||    
T  19909688 atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat 19909626  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 511 - 584
Target Start/End: Complemental strand, 25569341 - 25569268
Alignment:
Q  511 ccccagcactcaattaatttacacatgaaatctgtaatccactgtctgaaactatatttgatcgatccacaaca 584  Q
    ||||||||||| | |||| |||||| ||||| || |||||||||||||||||||||||||||| ||||||||||    
T  25569341 ccccagcactccactaatctacacaagaaatttgcaatccactgtctgaaactatatttgatcaatccacaaca 25569268  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 15856545 - 15856587
Alignment:
Q  304 actctcaattattcaaaatagccaaccaactatacacactata 346  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  15856545 actcacaattgttcaaaatagccaaccaactatacacattata 15856587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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