View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_31 (Length: 430)
Name: NF11835_high_31
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 25841599 - 25841201
Alignment:
| Q |
1 |
caagagatcaaagggaattagccagacaaagaaatataaaaatagagaaggaggcaattgaaaaggagaagaataacaaacttagaccattgcaattcca |
100 |
Q |
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| T |
25841599 |
caagagatcaaagggaattagccagacaaagaaatataaaaatagagaaggaggcaattgaaaaggagaagaataacaaacttagaccattgcaattcca |
25841500 |
T |
|
| Q |
101 |
aaagaagaagattgaagacgacacggaggccaaactcagaccgttacaaattcaaaagcagaagattgaagacgatgctaaagtcaaactcagaaaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25841499 |
aaagaagaagattgaagacgacacggaggccaaactcagaccgttgcagattcaaaagcagaagattgaagacgacgctaaagtcaaactcagaaaatta |
25841400 |
T |
|
| Q |
201 |
caaactgaaaaggagaagattcaagatgaggcaaaagttagattcagaaaattacaaatcgaaaaggataagattgaagatgacgcgaaagcaaaactga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
25841399 |
caaactgaaaaggagaagattcaagatgaggcaaaagttagattcagaaaattacaaatcgaaaaggataagattgaagatgatgcgaaagctaaactga |
25841300 |
T |
|
| Q |
301 |
gacgattaaatataaaatatggaaagccttgaaaggagaccaaatccaaatacaagaggaaggggcactataataagatttgtagaagtagtatttgca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25841299 |
gacgattaaatataaaatatggaaagccttgaaaggagaccaaatccaaatacaagaggaaggggcactataataagatttgtagaagtagtatttgca |
25841201 |
T |
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