View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_37 (Length: 417)
Name: NF11835_high_37
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 29783319 - 29783710
Alignment:
| Q |
18 |
tgataggagtttgaccttgtaacttcaagaaacaaagtttaaattccctcggaaacagttgtaaatggtcattaatgtcactttgataataacaactaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29783319 |
tgataggagtttgaccttgtaacttcaagaaacaaagtttaaattccctcggaaacagttgtaaatggtcattaatgtcactttgataataacaactaat |
29783418 |
T |
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| Q |
118 |
aaaatatctttaatctaatactgttgtctaatttctcaaacttacagttatcccccgattcatagatcagtggttcaatcatctaataatgctgagcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29783419 |
aaaatatctttaatctaatactgttgtctaatttctcaaacttacagttatcccccgattcatagatcagtggttcaatcatctaataatgctgagcttg |
29783518 |
T |
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| Q |
218 |
atggagaacaagtttccaatgagcaagcataaaagcagtttgtgatccccggtggaccaatgaatgcatcctcttctccagtgcaaagcttctaagttcc |
317 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
29783519 |
atggagaacaagtttccagtgagcaagcacaaaagcagtttgtgatccccggtggaccaatgaatgcgtcctcttctccagtgcaaagcttctacgttcc |
29783618 |
T |
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| Q |
318 |
accatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactccagaacgaggtacaattgcatt |
409 |
Q |
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| T |
29783619 |
accatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactccagaacgaggtacaattgcatt |
29783710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 29787326 - 29787717
Alignment:
| Q |
18 |
tgataggagtttgaccttgtaacttcaagaaacaaagtttaaattccctcggaaacagttgtaaatggtcattaatgtcactttgataataacaactaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787326 |
tgataggagtttgaccttgtaacttcaagaaacaaagtttaaattccctcggaaacagttgtaaatggtcattaatgtcactttgataataacaactaat |
29787425 |
T |
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| Q |
118 |
aaaatatctttaatctaatactgttgtctaatttctcaaacttacagttatcccccgattcatagatcagtggttcaatcatctaataatgctgagcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787426 |
aaaatatctttaatctaatactgttgtctaatttctcaaacttacagttatcccccgattcatagatcagtggttcaatcatctaataatgctgagcttg |
29787525 |
T |
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| Q |
218 |
atggagaacaagtttccaatgagcaagcataaaagcagtttgtgatccccggtggaccaatgaatgcatcctcttctccagtgcaaagcttctaagttcc |
317 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
29787526 |
atggagaacaagtttccagtgagcaagcacaaaagcagtttgtgatccccggtggaccaatgaatgcgtcctcttctccagtgcaaagcttctacgttcc |
29787625 |
T |
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| Q |
318 |
accatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactccagaacgaggtacaattgcatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787626 |
accatctcaaacacatgcagcccacatgacttatggagagggatcccagctgggagctcaaacaaaactccagaacgaggtacaattgcatt |
29787717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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