View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_39 (Length: 416)
Name: NF11835_high_39
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 46262839 - 46262449
Alignment:
| Q |
19 |
attgcatatgctaaaataatttttacatgtctagccatgaaaaaatgtaacaatatttcatgctttgccacggaaatactctgataaatatggtgttgtt |
118 |
Q |
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| T |
46262839 |
attgcatatgctaaaataatttttacatgtctagccatgaaaaaatgtaacaatatttcatgctttgccacggaaatactctgataaatatggtgttgtt |
46262740 |
T |
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| Q |
119 |
tatcaaaaataattccttatcacatagaccaacttatagatctttattatgaattagtggaatttccttatatcttcgaatgaatttgatatgcaaaaga |
218 |
Q |
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| T |
46262739 |
tatcaaaaataattccttatcacatagaccaacttatagatctttattatgaattagtggaatttccttatatcttcgaatgaatttgatatgcaaaaga |
46262640 |
T |
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| Q |
219 |
cattctttccaacaaaataacatgggtgaagattatgaaattttgtagttttcaaagtgtacnnnnnnnnnnnnnnnnnnnnnnngggtcaaagttactt |
318 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46262639 |
cattctttccaacataataacatggctgaagattatgaaattttgtagttttcaaagtgtactttttgttttgccttttttttttgggtcaaagttactt |
46262540 |
T |
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| Q |
319 |
ggcatgtttcagagagttttatgttcttgaatatttcacatggttgcaggaaaagttgattttgctccgaatgaagatgcacatgtcattg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262539 |
ggcatgtttcagagagttttatgttcttgaatatttcacatggttgcaggaaaagttgattttgctccgaatgaagatgcacatgtcattg |
46262449 |
T |
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