View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_high_5 (Length: 653)
Name: NF11835_high_5
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 124 - 642
Target Start/End: Complemental strand, 8270714 - 8270192
Alignment:
| Q |
124 |
gaattacctcttccatcattcatctttcctctccctgatattgtgatctttatcttcttctcccctnnnnnnnttaataattttaacaacacactcttta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8270714 |
gaattacctcttccatcattcatctttcctctccctgatattgtgatctttatcttcttctcccctaaaaaaattaataattttaacaacacactcttta |
8270615 |
T |
|
| Q |
224 |
actcattatgtaatttcaccttatcttttttgttatagttgatagtgaaattcaaatgaaatttaacaaatttaagagataagaagtatgttgaaaaatg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8270614 |
actcattatgtaatttcaccttatcttttttgttatagttgatagtgaaattcaaatgaaatttaacagatttaagagataagaagtatgttgaaaaatg |
8270515 |
T |
|
| Q |
324 |
cgtgttcaaacaaaattcttcgatttcttatnnnnnnnnnt----cttctattacgatccaccacatcatttaatttgttaacccacttggagggccata |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270514 |
cgtgttcaaacaaaattcttcgatttcttataaaaaaaaaaaaaacttctattacgatccaccacatcatttaatttgttaacccacttggagggccata |
8270415 |
T |
|
| Q |
420 |
ttgtaagttgcttcgtactagtaataggacaagaagttcattggtccataaacaatttactcctcacattgatgagtgatgacatctcatatcatagtca |
519 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270414 |
ttgtaagttgtttcgtactagtaataggacaagaagttcattggtccataaacaatttactcctcacattgatgagtgatgacatctcatatcatagtca |
8270315 |
T |
|
| Q |
520 |
cacaattcctcttatcacacaacacatacacgtcctcaccctcaccaatactttgaacttccaattttatgtccctgatttaagcttgtctagtgtctac |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270314 |
cacaattcctcttatcacacaacacatacacgtcctcaccctcaccaatactttgaacttccaattttatgtccctgatttaagcttgtctagtgtctac |
8270215 |
T |
|
| Q |
620 |
ctacccgttttaactaccttcat |
642 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8270214 |
ctacccgttttaactaccttcat |
8270192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 8270821 - 8270778
Alignment:
| Q |
17 |
catttaacatttgctccaattaggatttggatgtaaaacatgtg |
60 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8270821 |
catttaacatttgctctaattaggatttggatgtaaaacatgtg |
8270778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University