View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_51 (Length: 382)

Name: NF11835_high_51
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_51
NF11835_high_51
[»] chr3 (2 HSPs)
chr3 (25-373)||(51733043-51733391)
chr3 (210-271)||(18268002-18268063)
[»] chr1 (2 HSPs)
chr1 (60-163)||(356081-356184)
chr1 (248-304)||(17831566-17831622)
[»] chr6 (2 HSPs)
chr6 (244-304)||(4323900-4323960)
chr6 (200-283)||(7936883-7936964)
[»] chr7 (2 HSPs)
chr7 (219-274)||(9483382-9483437)
chr7 (236-281)||(31924417-31924462)
[»] chr5 (3 HSPs)
chr5 (207-254)||(28452602-28452649)
chr5 (249-304)||(41542507-41542562)
chr5 (209-257)||(19625927-19625975)
[»] chr4 (1 HSPs)
chr4 (210-288)||(22402367-22402446)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 25 - 373
Target Start/End: Complemental strand, 51733391 - 51733043
Alignment:
Q  25 caacatgtcctaggagtggaatttcactggtactacgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51733391 caacatgtcctaggagtggaatttcactggtactacgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatat 51733292  T
Q  125 ctgcatgtcttgaattgaacggccgttaatctgcaaaaaagaattgattcatcaataggccgtatctaggagctttgtagcaccgacacaacaccgacac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51733291 ctgcatgtcttgaattgaacggccgttaatctgcaaaaaagaattgattcatcaataggccatatctaggagctttgtagcaccgacacaacaccgacac 51733192  T
Q  225 atctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtcggtgcttcatagtttaagag 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51733191 atctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtcggtgcttcatagtttaagag 51733092  T
Q  325 tcacagggtggtccccatattcaagttgatagctcacccgcatctgtgc 373  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51733091 tcacagggtggtccccatattcatgttgatagctcacccgcatctgtgc 51733043  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 18268002 - 18268063
Alignment:
Q  210 acacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgt 271  Q
    ||||||||||||||||| || | ||||||||||| |  |||||||||| |||||||| ||||    
T  18268002 acacaacaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgt 18268063  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 356184 - 356081
Alignment:
Q  60 cgccgtggtacattcatcaccctttcaacaagcacaactggtatacgcaaaggatctccaaatatctgcatgtcttgaattgaacggccgttaatctgca 159  Q
    ||||||||| ||||| |||| | |||||||| ||||| ||||||||| |||||||||||||| || |||||||||||||||||  ||  |||||||||||    
T  356184 cgccgtggtgcattcgtcacacgttcaacaatcacaattggtatacgtaaaggatctccaaacatttgcatgtcttgaattgattggttgttaatctgca 356085  T
Q  160 aaaa 163  Q
    ||||    
T  356084 aaaa 356081  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 17831566 - 17831622
Alignment:
Q  248 attttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc 304  Q
    |||||||||| |||||| |||||||  | ||||||| |||||| |||||||||||||    
T  17831566 attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtc 17831622  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 4323900 - 4323960
Alignment:
Q  244 ttctattttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc 304  Q
    ||||||||||| || ||||||||| ||||||| |||||||||||| ||||||||| |||||    
T  4323900 ttctattttcttaaattattatcgttgtcaacgtgtcagtatcgtgttcggtgtccgtgtc 4323960  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 7936964 - 7936883
Alignment:
Q  200 tgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtcagt 283  Q
    |||||||| ||||  |||||||||||| || | || |||||||||||||||||||||  |||||  |||||||||| |||||||    
T  7936964 tgtagcactgacatgacaccgacacatgtgctgacattcaattattctattttctca--ttattgccggtgtcaacatgtcagt 7936883  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 9483437 - 9483382
Alignment:
Q  219 cgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaa 274  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||| ||||||||    
T  9483437 cgacacatatggttacattcaattattctattttctcaaattattattggtgtcaa 9483382  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 31924462 - 31924417
Alignment:
Q  236 ttcaattattctattttctcaagttattatcggtgtcaacctgtca 281  Q
    ||||||| ||||||||||| || ||||||||||||||||| |||||    
T  31924462 ttcaattgttctattttcttaaattattatcggtgtcaacgtgtca 31924417  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 28452649 - 28452602
Alignment:
Q  207 ccgacacaacaccgacacatctggtaacgttcaattattctattttct 254  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||||    
T  28452649 ccgacacaacaccaacacatgtggtaacattcaattattttattttct 28452602  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 41542507 - 41542562
Alignment:
Q  249 ttttctcaagttattatcggtgtcaacctgtcagtatcgtattcggtgtctgtgtc 304  Q
    ||||||||| ||||||||||||||||| |||||||||| ||  ||||||| |||||    
T  41542507 ttttctcaaattattatcggtgtcaacgtgtcagtatcataaccggtgtccgtgtc 41542562  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 19625927 - 19625975
Alignment:
Q  209 gacacaacaccgacacatctggtaacgttcaattattctattttctcaa 257  Q
    |||||||||| ||||||| |||| || ||||||||||| ||||||||||    
T  19625927 gacacaacactgacacatgtggttacattcaattattccattttctcaa 19625975  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 22402446 - 22402367
Alignment:
Q  210 acacaacaccgacacatctggtaacgttcaatta-ttctattttctcaagttattatcggtgtcaacctgtcagtatcgt 288  Q
    |||| |||||||||||| |||| || |||||| | |||||||||||||| |||||| |||| || || ||||||||||||    
T  22402446 acacgacaccgacacatgtggttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatcgt 22402367  T

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