View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_52 (Length: 379)
Name: NF11835_high_52
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 4999479 - 4999132
Alignment:
| Q |
18 |
gaaccagcaactctagacatagcaccttcatttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagca |
117 |
Q |
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| T |
4999479 |
gaaccagcaactctagacatagcaccttcatttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagca |
4999380 |
T |
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| Q |
118 |
atatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatct |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4999379 |
atatgttattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatct |
4999280 |
T |
|
| Q |
218 |
cttagaccaatccaactccacaaacttctcctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaa |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4999279 |
cttagaccaatccaactccacaaacttcccctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaa |
4999180 |
T |
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| Q |
318 |
ctacaacaaaacaacagtttcactatattagcatgtctaattctaccc |
365 |
Q |
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| T |
4999179 |
ctacaacaaaacaacagtttcactatattagcatgtctaattctaccc |
4999132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 26736056 - 26735977
Alignment:
| Q |
68 |
cttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatattattactcttcacatccctatgaa |
147 |
Q |
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| T |
26736056 |
cttagcaagtccaaaatcagcaacatgagcctcaaaatcagcatcaagcaatatattattagacttaacatccctatgaa |
26735977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 21468560 - 21468521
Alignment:
| Q |
144 |
tgaacaatagcaggaacacaatcatggtgtaaataagcca |
183 |
Q |
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| T |
21468560 |
tgaacaataggaggagcacaatcatggtgtaaataagcca |
21468521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 38868357 - 38868291
Alignment:
| Q |
114 |
agcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataag |
180 |
Q |
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| T |
38868357 |
agcaatatattactagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataag |
38868291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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