View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_53 (Length: 378)
Name: NF11835_high_53
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 34957928 - 34957604
Alignment:
| Q |
18 |
ttattattattcatgaataatataatttacctgaaacatttggatctatgg-aaatttagattaagaattcaaccatgcttaaaaccatgaatatataac |
116 |
Q |
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| T |
34957928 |
ttattattattcatgaataat-----ttacctgaaacatttggatctatgggaaatttagattaagaattcaaccatgcttaaaaccatgaatatataac |
34957834 |
T |
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| Q |
117 |
ttgcatctgaatatatatgattaaataattgataagaataaattaagaaagaaaaaggacaagaaattaatggattaactaaagaatttccttcatctcn |
216 |
Q |
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| T |
34957833 |
ttgcatctgaa------------aagaat--------ataaattaagaaagaaaaagggcaagaaattaatggattaactgaagaatttccttcatctca |
34957754 |
T |
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| Q |
217 |
nnnnnnnnnnnncttgaagaatttccttggtaagtgcaatagggctaaaaaataggctaaaaatatgaacttacatgaatgatgtcactctttttcatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957753 |
aaaaagaaaaaacttgaagaatttccttggtaagtgcaatagggctaaaaaataggctaaaaatatgaacttacatgaatgatgtcactctttttcatcc |
34957654 |
T |
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| Q |
317 |
acttaaaagcatttgctatatgtgaagaattttcttgagtttgttgatgt |
366 |
Q |
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| T |
34957653 |
acttaaaagcatttgctatatgtgaagaattttcttgagtttgttgatgt |
34957604 |
T |
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