View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_56 (Length: 376)
Name: NF11835_high_56
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 14998345 - 14998711
Alignment:
| Q |
1 |
gccaatatttcaggagagtgaactctccaaggaagaagcacaagctcaagaagcagcttatgccaatatgactagagaattaggcactgaggttagttca |
100 |
Q |
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| T |
14998345 |
gccaatatttcaggagagtgaactctccaaggaagaagcacaagctcaagaagcagcttatgccaatatgactagagaattaggcactgaggttagttca |
14998444 |
T |
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| Q |
101 |
ttattttttggcagagttgtgtttaaaatctaacgatgtgtgttattcagaagaagtatttcagacggttaatttgcgcatttaacttttcttgttccag |
200 |
Q |
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| T |
14998445 |
ttattttttggcagagttgtgtttaaaatctaatgatgtgtgttattcagaagaagtatttcagacggttaatttgcacgtttaacttttgttgttccag |
14998544 |
T |
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| Q |
201 |
ctgtctaagatcgatatggctttgacaaatctcaaaacaaaagcaattgcaaagtgcaggtttgtgaaagagtcactcgatgaatgatagtttagtgcta |
300 |
Q |
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| T |
14998545 |
ctgtctaagattgatatggctttgacaagtctcaaaacaaaagcaattgcaaagtgcaggtttgtgaaaaaatcactcgttgaatgatagtttagtgcaa |
14998644 |
T |
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| Q |
301 |
-atattatctgttagtttagttcttagtctcgcaaagaatgattattttgttgaaccacctgatgat |
366 |
Q |
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| T |
14998645 |
cgtattatctgttagtttagcgcttagtcttgccaagaatgattattttcttgaaccacctgctgat |
14998711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 14735176 - 14735090
Alignment:
| Q |
44 |
gctcaagaagcagcttatgccaatatgactagagaattaggcactgaggttagttcattattt---tttggcagagttgtgtttaaa |
127 |
Q |
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| T |
14735176 |
gctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtgtttaaa |
14735090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 44 - 343
Target Start/End: Original strand, 29467236 - 29467535
Alignment:
| Q |
44 |
gctcaagaagcagcttatgccaatatgactagagaattaggcactgaggttagttcattattttttggcagagttgtgtttaaaatctaacgatgtgtgt |
143 |
Q |
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| T |
29467236 |
gctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattattttttttcagagctgtgtttaaaatctaatgatgtatgt |
29467335 |
T |
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| Q |
144 |
tattcagaagaagtatttcagacggttaatttgcgcatttaacttttcttgttccagctgtctaagatcgatatggctttgacaaatctcaaaacaaaag |
243 |
Q |
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| T |
29467336 |
tacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaagtctcaaaacaacag |
29467435 |
T |
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| Q |
244 |
caattgcaaagtgcaggtttgtgaaagagtcactcgatgaatgatagtttagtgcta-atattatctgttagtttagttcttagtctcgcaaagaatgat |
342 |
Q |
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| T |
29467436 |
cgatttcacagtgcaggtctgt-aaagagtcactcgatgaatgatagtttagtgctacatattatctgttagtttagtgcttagtcccgcaatgaatgat |
29467534 |
T |
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