View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_61 (Length: 370)

Name: NF11835_high_61
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_61
NF11835_high_61
[»] chr2 (14 HSPs)
chr2 (18-354)||(3527978-3528316)
chr2 (65-248)||(12853000-12853183)
chr2 (80-248)||(6708798-6708966)
chr2 (65-255)||(23177788-23177978)
chr2 (65-255)||(23589045-23589235)
chr2 (65-229)||(14714606-14714770)
chr2 (65-235)||(41296286-41296456)
chr2 (80-174)||(29424505-29424599)
chr2 (66-229)||(4512221-4512384)
chr2 (64-242)||(21010323-21010501)
chr2 (70-173)||(7983589-7983692)
chr2 (65-160)||(26205127-26205222)
chr2 (65-120)||(45047456-45047511)
chr2 (85-147)||(25570790-25570852)
[»] scaffold0051 (1 HSPs)
scaffold0051 (64-238)||(39730-39904)
[»] chr3 (12 HSPs)
chr3 (65-248)||(11219544-11219727)
chr3 (65-248)||(32979202-32979385)
chr3 (65-229)||(17349940-17350104)
chr3 (64-229)||(39133130-39133295)
chr3 (66-235)||(53808433-53808602)
chr3 (65-235)||(34902826-34902996)
chr3 (65-213)||(7483379-7483527)
chr3 (65-242)||(47765552-47765730)
chr3 (65-242)||(8371334-8371510)
chr3 (86-192)||(31638255-31638358)
chr3 (107-150)||(43346364-43346407)
chr3 (132-188)||(7483272-7483328)
[»] chr5 (5 HSPs)
chr5 (64-248)||(21387750-21387933)
chr5 (24-248)||(18693769-18693995)
chr5 (70-239)||(7426760-7426929)
chr5 (109-185)||(30910904-30910980)
chr5 (64-160)||(2167422-2167518)
[»] chr1 (17 HSPs)
chr1 (64-248)||(50678476-50678659)
chr1 (65-248)||(26055966-26056149)
chr1 (65-234)||(37624403-37624572)
chr1 (65-235)||(30551421-30551591)
chr1 (65-242)||(9633889-9634066)
chr1 (65-248)||(52742794-52742978)
chr1 (65-234)||(27689397-27689570)
chr1 (65-235)||(23081958-23082128)
chr1 (65-229)||(51218803-51218968)
chr1 (64-169)||(14764342-14764447)
chr1 (65-160)||(22766727-22766822)
chr1 (64-138)||(44977334-44977408)
chr1 (65-149)||(49141414-49141498)
chr1 (112-149)||(41872740-41872777)
chr1 (107-148)||(42246047-42246087)
chr1 (85-145)||(21277128-21277188)
chr1 (85-145)||(51726766-51726826)
[»] chr8 (23 HSPs)
chr8 (64-189)||(37276121-37276246)
chr8 (65-235)||(13363410-13363580)
chr8 (66-242)||(10052219-10052394)
chr8 (70-256)||(45541603-45541784)
chr8 (65-248)||(7486191-7486374)
chr8 (65-235)||(36756178-36756349)
chr8 (65-215)||(13513534-13513684)
chr8 (65-215)||(13603067-13603217)
chr8 (65-183)||(21961937-21962055)
chr8 (65-229)||(44103132-44103298)
chr8 (65-213)||(21670178-21670326)
chr8 (65-215)||(117162-117311)
chr8 (65-234)||(39546510-39546679)
chr8 (195-265)||(37276027-37276098)
chr8 (67-229)||(39325671-39325834)
chr8 (23-121)||(36938751-36938851)
chr8 (65-160)||(21267246-21267341)
chr8 (185-239)||(41522549-41522603)
chr8 (107-156)||(24069357-24069406)
chr8 (107-156)||(34617106-34617155)
chr8 (85-149)||(13366968-13367032)
chr8 (85-145)||(36070312-36070372)
chr8 (85-149)||(44606273-44606337)
[»] scaffold1974 (1 HSPs)
scaffold1974 (65-255)||(440-630)
[»] scaffold1878 (1 HSPs)
scaffold1878 (65-255)||(644-834)
[»] chr4 (18 HSPs)
chr4 (65-201)||(44302834-44302970)
chr4 (65-248)||(11094640-11094822)
chr4 (66-242)||(29687802-29687979)
chr4 (65-239)||(39592118-39592291)
chr4 (65-229)||(2293362-2293527)
chr4 (65-213)||(36604694-36604843)
chr4 (69-229)||(43894223-43894383)
chr4 (117-239)||(52980150-52980272)
chr4 (65-169)||(38418915-38419019)
chr4 (65-236)||(35787910-35788081)
chr4 (128-188)||(36604586-36604646)
chr4 (81-148)||(50530633-50530700)
chr4 (66-174)||(6616103-6616212)
chr4 (109-185)||(7707751-7707827)
chr4 (85-156)||(26393038-26393109)
chr4 (65-118)||(86917-86970)
chr4 (109-149)||(1794574-1794614)
chr4 (65-149)||(38555194-38555278)
[»] scaffold0098 (1 HSPs)
scaffold0098 (64-227)||(41021-41184)
[»] chr7 (8 HSPs)
chr7 (65-252)||(14108885-14109073)
chr7 (65-252)||(14418842-14419030)
chr7 (86-239)||(4167586-4167739)
chr7 (64-241)||(18801328-18801505)
chr7 (65-229)||(24494887-24495053)
chr7 (64-241)||(19848660-19848837)
chr7 (65-174)||(38406132-38406240)
chr7 (81-148)||(10256253-10256320)
[»] scaffold0084 (1 HSPs)
scaffold0084 (66-229)||(13042-13205)
[»] scaffold0015 (1 HSPs)
scaffold0015 (65-183)||(207682-207800)
[»] chr6 (4 HSPs)
chr6 (66-215)||(18139338-18139488)
chr6 (147-255)||(34084046-34084154)
chr6 (64-113)||(13507125-13507174)
chr6 (65-248)||(33801835-33802019)
[»] scaffold0290 (1 HSPs)
scaffold0290 (65-166)||(9379-9480)
[»] scaffold0025 (1 HSPs)
scaffold0025 (66-248)||(56516-56701)
[»] scaffold0045 (1 HSPs)
scaffold0045 (85-156)||(77090-77161)
[»] scaffold2071 (1 HSPs)
scaffold2071 (109-149)||(596-636)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 3528316 - 3527978
Alignment:
Q  18 ttaagttggtctcataaatcttttgtcgttacttcttctg-tcttct-tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttc 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3528316 ttaagttggtctcataaatcttttgtcgttacttcttctggtcttctctattagtttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttc 3528217  T
Q  116 accatagaccgtattaaattttttaattttaaccagttgat-ttttcctttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaac 214  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3528216 accatagaccgtattaaattttttaattttaaccagttgattttttcctttaaaagaggaccattgaattatgtagggtgtattgtattttactgtgaac 3528117  T
Q  215 ctataacacctaatatttttctcactttcttcattttcatc-acttcatcaaaaccatccaaataaacccatgnnnnnnnncagtccagnnnnnnngaga 313  Q
     ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||   |        ||||||||       ||||    
T  3528116 ttataacacctaatatttttctcactttcttcattttcatcgccttcatcaaaactatccaaataaacc--agaaaaaaaacagtccagaaaaaaagaga 3528019  T
Q  314 taaaatatattcaacaattaatcacaaatacgttttctctg 354  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  3528018 taagatatattcaacaattaatcacaaatacgttttctctg 3527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 12853000 - 12853183
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    ||||| |||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | |||    
T  12853000 gttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttgaattttaaccatttgatttattctt 12853099  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    ||||||||||||||||||||||||||  | ||||||| |||  ||| ||||  |||||||||| | |||||||| |||||||||    
T  12853100 taaaagaggaccattgaattatgtagagtctattgtactttcctgtcaaccactaacacctaacacttttctcattttcttcat 12853183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 6708966 - 6708798
Alignment:
Q  80 caaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccatt 179  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| | |||||||| |||||| ||    
T  6708966 caaaagtctgaggtgaaccatatttaaaggtggttcaccataaaccgtattaaattttctaattttaaccatttgatttattctttaaaaaaggaccgtt 6708867  T
Q  180 gaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    |||||||||||| | ||||| | |||  ||||||||  |||||||||| | |||||||| |||||||||    
T  6708866 gaattatgtagggtctattgcactttcctgtgaaccactaacacctaacacttttctcattttcttcat 6708798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 23177788 - 23177978
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  |||| |||||| |||||||||||||||| ||||||||| |||| | ||||||||||| |||||||||||| ||||||||| |||    
T  23177788 gttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaaccatttgattttttctt 23177887  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatc 255  Q
    |||| | ||||| ||||||||||| || | ||||||| |||| ||||||||  |||||||||||  |||| ||| ||||||||| ||||||    
T  23177888 taaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaattcttttatcattttcttcatcttcatc 23177978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 23589045 - 23589235
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  |||| |||||| |||||||||||||||| ||||||||| |||| | ||||||||||| |||||||||||| ||||||||| |||    
T  23589045 gttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaaccatttgattttttctt 23589144  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatc 255  Q
    |||| | ||||| ||||||||||| || | ||||||| |||| ||||||||  |||||||||||  |||| ||| ||||||||| ||||||    
T  23589145 taaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaattcttttatcattttcttcatcttcatc 23589235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 14714606 - 14714770
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||| |||||||  || |||||| ||||||||||  ||||| ||||||||| |||    
T  14714606 gttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaatttttttaattgcaaccatttgattttttctt 14714705  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||| |||| |||||| ||||||  | |||||||||||| ||||||||  ||||||||||||    
T  14714706 taaaagatgaccgttgaatcatgtagagtctattgtattttactgtgaaccactaacacctaata 14714770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 41296456 - 41296286
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||  |||| |||||| ||||||||| |||||| || | || ||||||||||||| ||||||  ||||||||| |||    
T  41296456 gttagtttttaacaccaaatgtctaaagtgaatcatattaaaaggtggtgcaccatggatcttagtaaattttttaatattaaccttttgattttttctt 41296357  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    ||||||||||   ||  || ||||||||| |||||||||||| |||||| |  ||||||||||||||||||    
T  41296356 taaaagaggattgttcgatcatgtaggatctattgtattttagtgtgaatcactaacacctaatatttttc 41296286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 29424599 - 29424505
Alignment:
Q  80 caaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagagga 174  Q
    |||| ||||||| |||||||| |||||||||||| || |||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||    
T  29424599 caaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaatttttaaattttaaccttttgatttttcctttaaaagagga 29424505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 4512221 - 4512384
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttccttt 165  Q
    ||||||||||| | ||||  |||||| ||||||||||| ||| ||||| |||||||  || |||||| |||||||||||| |||| ||||||||| ||||    
T  4512221 ttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttgaccatttgattttttcttt 4512320  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    |||||| |||| |||||| |||| || | |||| || |||| ||||||||  | ||||||||||    
T  4512321 aaaagatgaccgttgaatcatgtggggtctattatactttactgtgaaccattcacacctaata 4512384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 21010501 - 21010323
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    |||||||| |||| | |||| ||||||  |||||| ||||||||||||||  | |||| ||| |||||||||||| ||||||||||  || |||||| ||    
T  21010501 tgttagttgttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaatttttaaattttaaccctttaattttttct 21010402  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcacttt 242  Q
    | ||||||  |   ||| || | ||||| | |||||||||||||| ||||||  |||||||||||||||||||||||||    
T  21010401 taaaaagataattgttggatcaggtagggtctattgtattttattatgaaccactaacacctaatatttttctcacttt 21010323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 7983692 - 7983589
Alignment:
Q  70 tttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaa 169  Q
    ||||||| | |||| ||||||| |||||||| |||||||||||| ||||||||| | |||||||||||| ||||| | ||  ||||||||| ||||||||    
T  7983692 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcatccttttgattttttctttaaaa 7983593  T
Q  170 gagg 173  Q
    ||||    
T  7983592 gagg 7983589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 26205127 - 26205222
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattttt 160  Q
    |||||||||||| | |||| ||||||| ||||||||| ||||| ||||| |||||||  || |||||| ||||| ||||||||||| |||||||||    
T  26205127 gttagtttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaattttttaaattttaaccatttgattttt 26205222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 45047456 - 45047511
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccat 120  Q
    |||| ||||||||| |||| ||||||| ||||||||||||||||||||| ||||||    
T  45047456 gttaatttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtccaccat 45047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 25570852 - 25570790
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaa 147  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| |||||||| ||||| ||||||    
T  25570852 gtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatattttatttttaa 25570790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 39904 - 39730
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||    
T  39904 tgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaattttttaattttaaccatttgattttttct 39805  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca 238  Q
    |||||||| ||||||||||||||||||| | ||||||| |||| ||||||||  ||||| |||||||||||||||    
T  39804 ttaaaagatgaccattgaattatgtagggtctattgtactttactgtgaaccactaacatctaatatttttctca 39730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 11219544 - 11219727
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    ||||| |||||| | ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||    
T  11219544 gttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccatagatcgtattaaattttttaattttaaccatttgattttttctt 11219643  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    |||||||||||| |||||||||||||| | ||||||| |||  ||||||||  |||||||||| | |||||||| |||||||||    
T  11219644 taaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaacacttttctcattttcttcat 11219727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 32979202 - 32979385
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | |||    
T  32979202 gttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgattgattctt 32979301  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    ||||||| |||  |||||||||||||| | ||||||| |||||||| || |  |||||||||||| ||||||||||||||||||    
T  32979302 taaaagatgactgttgaattatgtagggtatattgtactttattgtaaatcactaacacctaatacttttctcactttcttcat 32979385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 17350104 - 17349940
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||| |||||||  || || ||||||||||||||||||||| ||||||||| |||    
T  17350104 gttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaattttttaattttaaccatttgattttttctt 17350005  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    |||||||||||| |||||| ||||||| | ||||| | |||||||||||||  ||||||||||||    
T  17350004 taaaagaggaccgttgaatcatgtagggtctattgaactttattgtgaaccactaacacctaata 17349940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 39133130 - 39133295
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||| |||||||  || || ||||||||||||||||||||| ||||||||| ||    
T  39133130 tgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaattttttaattttaaccatttgattttttct 39133229  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||||||||  |||||| ||||| | | ||||||| |||||||||||||  ||||||||||||    
T  39133230 ttaaaagaggacagttgaatcatgtaaggtctattgtactttattgtgaaccactaacacctaata 39133295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 53808433 - 53808602
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttccttt 165  Q
    ||||||||||| | ||||  |||||| |||| ||||| |||||||||| ||||||| ||| |||||||||||| ||||||||||  ||||||||| ||||    
T  53808433 ttagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccataaaccttattaaatttttaaattttaaccctttgattttttcttt 53808532  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    ||||||| | | ||| || ||||||||| |||||||||||| ||||||||  ||||||||||||||||||    
T  53808533 aaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaatatttttc 53808602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 34902996 - 34902826
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||  ||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||  ||||||||| | |    
T  34902996 gttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaattttaaccttttgattttttcat 34902897  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    ||||||||||   ||| || ||||||| | |||||| ||||| ||||||||  ||||||||||||||||||    
T  34902896 taaaagaggattgttggatcatgtagggtttattgttttttagtgtgaaccactaacacctaatatttttc 34902826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 7483527 - 7483379
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | ||||  |||||| ||||||||||| ||| ||||  |||||||  || |||||| ||||||||||||||||| ||||||||| |||    
T  7483527 gttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggcccaccatatgccttattaatttttttaattttaaccatttgattttttctt 7483428  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaa 213  Q
    |||||||||||| |||||| |||| || | |||| || |||| ||||||    
T  7483427 taaaagaggaccgttgaatcatgtggggtctattatactttactgtgaa 7483379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 242
Target Start/End: Original strand, 47765552 - 47765730
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttga-tttttcct 163  Q
    |||||||||||| | ||||  ||| || ||||||||  |||||| |||| ||||||||||| |||| ||||||| ||||||||||  |||| ||||| ||    
T  47765552 gttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagaccttattgaatttttaaattttaaccttttgatttttttct 47765651  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcacttt 242  Q
    |||||||||||   ||| || ||||||| | ||||||||||||  |||||||  |||||| ||||||| || |||||||    
T  47765652 ttaaaagaggattgttggatcatgtagggtctattgtattttagcgtgaaccactaacacttaatattcttttcacttt 47765730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 242
Target Start/End: Original strand, 8371334 - 8371510
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | ||||  |||||   ||||| || ||| ||||||| |||||| |||| || ||||||||||||||||||||  ||||||||| |||    
T  8371334 gttagtttttaacatcaaatatctaaagcgaaccgtacttagaggtggtccaccatggaccttagtaaattttttaattttaaccctttgattttttctt 8371433  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcacttt 242  Q
    ||||||||||   ||| || || ||   | ||||||||| |||||| ||||  |||||||||||| ||||||||||||    
T  8371434 taaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaata-ttttctcacttt 8371510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 31638255 - 31638358
Alignment:
Q  86 tctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaatta 185  Q
    |||||| |||||||||||||||||||||  ||||||  || || |||||||||||||||||     ||||||||| |||||||||| |||  |||||| |    
T  31638255 tctaaggtgaaccatatttaaaggtggtctaccatacgccttactaaattttttaatttta---ctttgattttttctttaaaagaagacagttgaatca 31638351  T
Q  186 tgtagga 192  Q
    |||||||    
T  31638352 tgtagga 31638358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 43346407 - 43346364
Alignment:
Q  107 aggtggttcaccatagaccgtattaaattttttaattttaacca 150  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  43346407 aggtggtccaccatagaccttactaaattttttaattttaacca 43346364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 7483328 - 7483272
Alignment:
Q  132 aattttttaattttaaccagttgatttttcctttaaaagaggaccattgaattatgt 188  Q
    ||||||||||||||| ||| |||||||||   ||||||||||||| |||||| ||||    
T  7483328 aattttttaattttatccatttgatttttttgttaaaagaggaccgttgaatcatgt 7483272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 248
Target Start/End: Original strand, 21387750 - 21387933
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | ||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||    
T  21387750 tgttagtttttaacatcaaaactctaaggtgaaacatatttaaaggtggttcaccataggccgtattaaattttttaattttaaccatttgattttttct 21387849  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    ||||||||||||| |||||||||||||| | ||||||| |||| ||| |||   ||||||||||||||||| |||| ||||||||    
T  21387850 ttaaaagaggaccgttgaattatgtagggtctattgtactttactgtaaacgactaacacctaatattttt-tcacgttcttcat 21387933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 18693769 - 18693995
Alignment:
Q  24 tggtctcataaatcttttgtcgttacttcttctg-tcttct-tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccata 121  Q
    ||||| |||||||||| ||||||||| |||| || || ||| ||||||||||||| | ||||| |||||| |||||||||| ||||||||||||||||||    
T  18693769 tggtcccataaatcttctgtcgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccata 18693868  T
Q  122 gaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaattatgtaggatgtattgtatttta--ttgtgaacctata 219  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||   | ||||||| ||||   |||||||    |    
T  18693869 gaccgtattaaattttttaattttaatcatttgattttt-ctttaaaagaggaccgttgaattatgtatagtctattgtactttactgtgtgaacgacca 18693967  T
Q  220 acacctaatatttttctcactttcttcat 248  Q
    ||||||||||||||| |||||||||||||    
T  18693968 acacctaatattttt-tcactttcttcat 18693995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 7426760 - 7426929
Alignment:
Q  70 tttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaa 169  Q
    ||||||| | |||| ||||||| |||| |||||||||||||||| ||||||||||| |||||||||||| ||||| ||||  ||||||||| ||||||||    
T  7426760 tttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaatttttaaatttcaaccttttgattttttctttaaaa 7426859  T
Q  170 gaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcac 239  Q
    ||||    ||| || ||||||| | || ||||||||||||| |||    | |||||||||||||||||||    
T  7426860 gaggtttgttggatgatgtagggtctactgtattttattgtaaactaccatcacctaatatttttctcac 7426929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 30910904 - 30910980
Alignment:
Q  109 gtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaatta 185  Q
    ||||| ||||||||| | |||||| | ||||||||| ||||  |||| |||| ||||||||||| ||||||||||||    
T  30910904 gtggtccaccatagatcctattaattattttaatttcaaccgtttgagtttttctttaaaagagaaccattgaatta 30910980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 2167518 - 2167422
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattttt 160  Q
    |||||||||||||    ||| ||||||| |||||||  |||| || |||| ||||||||||| |||||||| ||||| | ||||||  |||||||||    
T  2167518 tgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaaatcttttattattaaccgtttgattttt 2167422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 248
Target Start/End: Original strand, 50678476 - 50678659
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  50678476 tgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa-tttttaattttaaccatttgattttttct 50678574  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    ||||||||||||  ||||||||  |||| | ||||||| |||| |||||||   ||||||||||||||||| |||||||||||||    
T  50678575 ttaaaagaggactgttgaattacatagggtctattgtactttactgtgaacgactaacacctaatatttttttcactttcttcat 50678659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 26056149 - 26055966
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    ||||| |||||| | |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||    
T  26056149 gttagattttaacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccataggccgtattaaattttttaattttaaccatttgatttattctt 26056050  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    |||||||||||| |||||||||||||| | ||||||| |||  ||||||||  |||||||||| | |||| ||| |||||||||    
T  26056049 taaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaaaacttttatcattttcttcat 26055966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 37624572 - 37624403
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||  ||||||||||| |||||| || |||||| |||| || ||||||||||||||||||||  ||||||||| |||    
T  37624572 gttagtttttaacatcaaatgtctaaagtgaaccatattaaaaggttgtgcaccatggaccttagtaaattttttaattttaaccttttgattttttctt 37624473  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatattttt 234  Q
    ||||||||||   |||||| ||||||| | |||||||||||| ||||||||  |||||||||||||||||    
T  37624472 taaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaatattttt 37624403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 30551591 - 30551421
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||  | |||| ||||||  ||||||||||| ||||||||| |||||| |||| || ||||||||||||||||||||  ||||||||| |||    
T  30551591 gttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgcaccatggaccttagtaaattttttaattttaaccttttgattttttctt 30551492  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    ||||||||||   ||| || ||||||| | |||||||||||| ||||||||  ||||||||||||||||||    
T  30551491 taaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatatttttc 30551421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 242
Target Start/End: Original strand, 9633889 - 9634066
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |||||| |||  ||||||||| |||    
T  9633889 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaattttgaccctttgattttttctt 9633988  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcacttt 242  Q
    || |||| ||   ||| |||||||||| | | |||||||||| ||||||    |||||  ||||||||| ||||||||    
T  9633989 tagaagaagatagttggattatgtagggtcttttgtattttagtgtgaataactaacatttaatattttcctcacttt 9634066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 52742978 - 52742794
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| || |||| |||||||| |||||||||||| |||||||||||  |||| |||||| ||||||||||  ||||||||| |||    
T  52742978 gttagtttttaacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacctaattacatttttaaattttaaccttttgattttttctt 52742879  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcat 248  Q
    |||||||| |   ||| || |   ||||| |||||||||||| ||| ||||  | ||||||||||||||||||| ||||||||||    
T  52742878 taaaagagaattgttggatcacaaaggatctattgtattttactgtaaaccactgacacctaatatttttctcacctttcttcat 52742794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 27689397 - 27689570
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaa----attttttaattttaaccagttgattttt 160  Q
    |||||||||||| | |||| ||||||  ||||||||||||||||||||| || ||| |||| ||||||     ||||||||||||||||  |||||||||    
T  27689397 gttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtccatcatggaccttattaatttttttttttaattttaaccttttgattttt 27689496  T
Q  161 cctttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatattttt 234  Q
     ||||||||||  |   ||| || ||||||| | |||||||||||| ||||||||  |||||||||||||||||    
T  27689497 tctttaaaagataattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaatattttt 27689570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 23082128 - 23081958
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | ||||  |||||  ||||||||||||||||||||| |||||| |||| || |||||||||||||||||||   |||||||||  ||    
T  23082128 gttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttaataaattttttaattttaacattttgattttttttt 23082029  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    |||||| |||   ||| || ||||| | | |||||||||||| ||| ||||  |||||||||||| |||||    
T  23082028 taaaagtggattgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaatacttttc 23081958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 51218968 - 51218803
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattt-ttcct 163  Q
    |||||||||||| | |||| ||||||  |||||||||||||||| |||| |||||||  || ||||||||||||||||||||| || ||||||| || |     
T  51218968 gttagtttttaacatcaaatgtctaaagtgaaccatatttaaagatggtccaccatatgccttattaaattttttaattttaatcatttgatttatttca 51218869  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||||||||  |||||| |||| || | ||||||| |||  ||||||||  | ||||||||||    
T  51218868 ttaaaagaggactgttgaatcatgtggggtctattgtactttcctgtgaaccactcacacctaata 51218803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 14764342 - 14764447
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| |  ||| || |||| |||||| |||||||||||||| |||||||  || || |||||||||| |||||||||| ||||||||| ||    
T  14764342 tgttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccatacgccatactaaatttttttattttaaccatttgattttttct 14764441  T
Q  164 ttaaaa 169  Q
    ||||||    
T  14764442 ttaaaa 14764447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 22766822 - 22766727
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattttt 160  Q
    |||||||||||| | ||||  |||||  ||||||||||||||||||||| |||||| |||| |  ||||||||||||||||||||  |||||||||    
T  22766822 gttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttcataaattttttaattttaaccttttgattttt 22766727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 44977334 - 44977408
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttt 138  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||| |||| || ||| ||||||||||||    
T  44977334 tgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccgtaaaccttattaaattttt 44977408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 49141498 - 49141414
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    |||||||||||| | |||| ||||||| |||||||||||||||| || | ||||||||||| ||| || |  |||||||||||||    
T  49141498 gttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagaccttataaattcatttaattttaacc 49141414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 41872740 - 41872777
Alignment:
Q  112 gttcaccatagaccgtattaaattttttaattttaacc 149  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  41872740 gttcaccatagaccttattaaattttttaatttaaacc 41872777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 42246047 - 42246087
Alignment:
Q  107 aggtggttcaccatagaccgtattaaattttttaattttaac 148  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  42246047 aggtggtttaccatagacc-tattaaattttttaattttaac 42246087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 21277128 - 21277188
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaatttt 145  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| |||||||| ||||| ||||    
T  21277128 gtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatcttttattttt 21277188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 51726826 - 51726766
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaatttt 145  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| |||||||| ||||| ||||    
T  51726826 gtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatcttttattttt 51726766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 37276246 - 37276121
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||    
T  37276246 tgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccatattaaattttttaattttaaccatttgattttttct 37276147  T
Q  164 ttaaaagaggaccattgaattatgta 189  Q
    ||||||||||||| ||||||||||||    
T  37276146 ttaaaagaggacctttgaattatgta 37276121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 13363580 - 13363410
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||  ||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||  || |||||| |||    
T  13363580 gttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaattttaaccttttaattttttctt 13363481  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttc 235  Q
    ||||||||||   ||| || ||||||| | |||||||||||  ||||||||  ||||||||||||||||||    
T  13363480 taaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaatatttttc 13363410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 10052219 - 10052394
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttccttt 165  Q
    ||||||||||| |  ||| ||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| | ||||||||  ||||||||| ||||    
T  10052219 ttagtttttaacattaaatgtctaagatgaaccatatttaaaggtggtccaccataaaccttattaaatttttaagttttaaccctttgattttttcttt 10052318  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcacttt 242  Q
    |||||| ||   ||| || ||||||| | |||||||||||| ||||||||  || |||||||| |||||||||||||    
T  10052319 aaaagatgattgttggatcatgtagggtctattgtattttactgtgaaccactaccacctaat-tttttctcacttt 10052394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 45541603 - 45541784
Alignment:
Q  70 tttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaa 169  Q
    ||||||| | |||||||||||  |||| ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| | |||||||||  ||||||     
T  45541603 tttttaacatcaaaagtctaaagtgaatcatatttaaag-tggttcaccatggaatgtattaaattttttaattttaacaatttgatttttt-tttaaat 45541700  T
Q  170 gaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatca 256  Q
    ||   ||||||||||||||||| | ||||||| |||| ||| ||||  ||| | ||||||||||||||||||||||||| |||||||    
T  45541701 ga---ccattgaattatgtagggtctattgtactttactgtaaaccactaatatctaatatttttctcactttcttcatcttcatca 45541784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 7486191 - 7486374
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||  |||||||| |||||| || || ||||||||||| |||||||||||| ||||||| ||  ||||||||| |||    
T  7486191 gttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttattaaatttttaaattttagccttttgattttttctt 7486290  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcat 248  Q
    ||||||||||   ||  || || || ||| |||||||||||||||| ||||   ||||||||||||||||||||| ||||||||    
T  7486291 taaaagaggattgttagatcatataagatctattgtattttattgtaaaccaccaacacctaatatttttctcaccttcttcat 7486374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 36756178 - 36756349
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | ||||  |||||| |||| ||||||||||||||||||||||||  || |||||||||||| ||||||||||  || |||||| |||    
T  36756178 gttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccataagccttattaaatttttaaattttaaccctttaattttttctt 36756277  T
Q  165 taaaagaggaccattgaattatgtaggatgt-attgtattttattgtgaacctataacacctaatatttttc 235  Q
    |||||||| | | ||| || ||||||| | | ||||||||||| ||||||||  ||||||||||||||||||    
T  36756278 taaaagagaatcgttggatcatgtagggtctaattgtattttactgtgaaccactaacacctaatatttttc 36756349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 13513534 - 13513684
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    ||||| |||||| | |||| || |||| ||||||||||||||| ||||| ||||||| ||| |||||| ||||||||||||||||| ||||||||| |||    
T  13513534 gttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgattttttctt 13513633  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacc 215  Q
    ||||| |||||| |||||| ||||  | | ||||||| |||| ||||||||    
T  13513634 taaaataggaccgttgaatcatgtgaggtctattgtactttactgtgaacc 13513684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 13603067 - 13603217
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    ||||| |||||| | |||| || |||| ||||||||||||||| ||||| ||||||| ||| |||||| ||||||||||||||||| ||||||||| |||    
T  13603067 gttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgattttttctt 13603166  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacc 215  Q
    ||||| |||||| |||||| ||||  | | ||||||| |||| ||||||||    
T  13603167 taaaataggaccgttgaatcatgtgaggtctattgtactttactgtgaacc 13603217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 21961937 - 21962055
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| |||| || |||||||| |||||||||||| |||||||  || || ||||||||||||||||||||| ||||||||| |||    
T  21961937 gttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaaccatttgattttttctt 21962036  T
Q  165 taaaagaggaccattgaat 183  Q
    ||||| | |||||||||||    
T  21962037 taaaacaagaccattgaat 21962055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 44103298 - 44103132
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaa-attttttaattttaaccagttga-tttttcc 162  Q
    |||||||||||| | |||| ||||||| |||||||| |||||||||||| |||||||  || ||||||  ||||||||||||||||| |||| ||||| |    
T  44103298 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaattttttttaattttaaccatttgatttttttc 44103199  T
Q  163 tttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
     |||||||| |||| |||||| |||| || | ||||||| |||||||||||||  | ||||||||||    
T  44103198 attaaaagaagaccgttgaatcatgtggggtctattgtactttattgtgaaccactcacacctaata 44103132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 21670178 - 21670326
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | ||||  |||||| ||||||||||| ||| ||||| |||||||  || |||||| ||||||||||||||||| ||| ||||| |||    
T  21670178 gttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttaaccatttggttttttctt 21670277  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaa 213  Q
    |||||||||||| |||||| |||| || | |||| || |||| ||||||    
T  21670278 taaaagaggaccgttgaatcatgtggggtctattatactttagtgtgaa 21670326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 117162 - 117311
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| |||  ||| |||||||||||| ||||||||||| || |||| |||| ||||||| ||  ||||||||| |||    
T  117162 gttagtttttaacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagaccttactaaa-ttttaaattttagccttttgattttttctt 117260  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacc 215  Q
    | ||||||||   ||| || || |||||| |||||||||||||||| ||||    
T  117261 tgaaagaggattgttggatcatataggatctattgtattttattgtaaacc 117311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 39546679 - 39546510
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| || |||| |||||||| |||||||||||| |||||| |||| || ||||    ||||||||||||  |||||||||  ||    
T  39546679 gttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggaccttagtaaaaaaattaattttaaccctttgattttttttt 39546580  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatattttt 234  Q
    ||||||||||   ||| || |||| |||| ||||||||||||  |||||||   |||||||||| |||||    
T  39546579 taaaagaggattgttggatcatgtgggatctattgtattttaccgtgaaccacaaacacctaattttttt 39546510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 37276098 - 37276027
Alignment:
Q  195 tattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatcac-ttcatcaa 265  Q
    ||||||| |||| ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  37276098 tattgtactttactgtgaaccactaacacctaatatttttctcactttcttcatcttcatcacattcatcaa 37276027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 229
Target Start/End: Complemental strand, 39325834 - 39325671
Alignment:
Q  67 tagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttga-tttttccttt 165  Q
    |||||||||| | |||| ||||||| ||||| || ||||||||||||  | ||||  || || ||||||||||||||||||||| |||| ||||| ||||    
T  39325834 tagtttttaacatcaaatgtctaaggtgaactatgtttaaaggtggtctatcatatgccttactaaattttttaattttaaccatttgatttttttcttt 39325735  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||   |  ||| || ||||| ||  ||||||| |||| ||||||||  ||||||||||||    
T  39325734 aaaagaatgcagttggatcatgtacgacctattgtactttactgtgaaccattaacacctaata 39325671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 36938751 - 36938851
Alignment:
Q  23 ttggtctcataaatcttttgtcgtt-acttcttctgtcttct-tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccat 120  Q
    ||||||||||||||||| || |||| |||  ||  ||||||| ||||| ||||||| | ||||  |||||  ||||||||||||||||||||||||||||    
T  36938751 ttggtctcataaatcttctgccgtttactattttggtcttctctgttaatttttaacatcaaatatctaaagtgaaccatatttaaaggtggttcaccat 36938850  T
Q  121 a 121  Q
    |    
T  36938851 a 36938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 21267246 - 21267341
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattttt 160  Q
    |||||||||||| | ||||  |||||| || |||||  || |||||||| ||||||| |||  ||||||||||| ||||||||||  |||||||||    
T  21267246 gttagtttttaacatcaaatatctaaggtggaccatgattcaaggtggtccaccatatacctaattaaatttttaaattttaaccttttgattttt 21267341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 41522603 - 41522549
Alignment:
Q  185 atgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcac 239  Q
    ||||||| | |||||||||||||||| ||||   |||||||||||||||||||||    
T  41522603 atgtagggtctattgtattttattgtaaaccaccaacacctaatatttttctcac 41522549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 24069406 - 24069357
Alignment:
Q  107 aggtggttcaccatagaccgtattaaattttttaattttaaccagttgat 156  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||| |||||    
T  24069406 aggtggtccaccatagaccttactaagttttttaattttaaccatttgat 24069357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 34617155 - 34617106
Alignment:
Q  107 aggtggttcaccatagaccgtattaaattttttaattttaaccagttgat 156  Q
    ||||||| |||| |||||| || ||||||||||||||||||||| |||||    
T  34617155 aggtggtccaccgtagaccttactaaattttttaattttaaccatttgat 34617106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 13367032 - 13366968
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| |||||||  ||||| ||||||||    
T  13367032 gtctaaggtgaaccaactttataggtggtccaccatagaccttattaaaccttttatttttaacc 13366968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 36070312 - 36070372
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaatttt 145  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| |||||||| ||||| ||||    
T  36070312 gtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatattttattttt 36070372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 44606273 - 44606337
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    ||||||| |||||||  |||| ||||||| ||||||||||| | |||||| ||||| ||||||||    
T  44606273 gtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatttttaacc 44606337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 630 - 440
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  |||| |||||| |||||||||||||||| ||||||||| |||| | ||||||||||| |||||||||||| ||||||||| |||    
T  630 gttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaaccatttgattttttctt 531  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatc 255  Q
    |||| ||| ||| ||||||||||| || | |||| || |||| |||||| |  |||||||||||| |||| ||| ||||||||| ||||||    
T  530 taaatgagaaccgttgaattatgtcgggtctattatactttactgtgaatcattaacacctaatacttttatcattttcttcatcttcatc 440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 644 - 834
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  |||| |||||| |||||||||||||||| ||||||||| |||| | ||||||||||| |||||||||||| ||||||||| |||    
T  644 gttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaaccatttgattttttctt 743  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttcattttcatc 255  Q
    |||| ||| ||| ||||||||||| || | |||| || |||| |||||| |  |||||||||||| |||| ||| ||||||||| ||||||    
T  744 taaatgagaaccgttgaattatgtcgggtctattatactttactgtgaatcattaacacctaatacttttatcattttcttcatcttcatc 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 44302834 - 44302970
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | |||    
T  44302834 gttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgattgattctt 44302933  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgta 201  Q
    ||||||| ||   |||||||||||||||| |||||||    
T  44302934 taaaagatgattgttgaattatgtaggatatattgta 44302970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 248
Target Start/End: Original strand, 11094640 - 11094822
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| |  ||||| |||||| ||||||||||||||||| |||||||||||| ||| ||||||   |||||||| |||    
T  11094640 gttagtttttaacatcaaatgtctaaggt--accatgtttaaatgtggttcaccatagaccttattaaatttttaaatattaaccttgtgattttttctt 11094737  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcat 248  Q
    ||||||||||   ||| || ||||| | | |||||||||||||||| ||||   |||||||||||||||||||| ||||||||||    
T  11094738 taaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaatatttttctcacctttcttcat 11094822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 29687979 - 29687802
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttccttt 165  Q
    ||||||||||| | |||| ||||| |  |||||||||||||||||||| |||| || ||| |||||||||||| | ||||||||| ||||||||| ||||    
T  29687979 ttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaatttttaagttttaaccatttgattttttcttt 29687880  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaa-tatttttctcacttt 242  Q
    ||||||| |   ||| || ||||| | | |||||||||||||||||||||  || ||||||| | |||||||||||||    
T  29687879 aaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaattttttttctcacttt 29687802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 39592291 - 39592118
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||| ||||||| | |||| ||||||| ||| |||| |||||||||||| || |||| ||| |||||||||||| ||||||||||  ||||||||| ||     
T  39592291 gttaatttttaacatcaaatgtctaaggtgagccatgtttaaaggtggtccatcatataccttattaaatttttaaattttaaccttttgattttttcta 39592192  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcac 239  Q
    ||||||||||   ||| || ||||||| | |||| ||||||||||| ||||   |||||||||||||||||||||    
T  39592191 taaaagaggattgttggatcatgtagg-tctattatattttattgtaaaccaccaacacctaatatttttctcac 39592118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 2293527 - 2293362
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattt-ttcct 163  Q
    |||||||||||| | |||| |||| |  |||| ||||||||||| |||| |||||||  || |||||||||||||||||||||||| ||||||| || |     
T  2293527 gttagtttttaaaatcaaatgtctgaagtgaatcatatttaaagatggtccaccatatgccttattaaattttttaattttaaccatttgatttatttca 2293428  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||||||||| |||||| |||| || | ||||||| |||| ||||||||  | ||||||||||    
T  2293427 ttaaaagaggaccgttgaatcatgtggggtctattgtactttactgtgaaccactcacacctaata 2293362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 36604843 - 36604694
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaatttttt-aattttaaccagttgatttttcct 163  Q
    |||||||||||||| ||||  |||||| ||||||||||| ||| ||||  |||||||  || |||||| |||||| ||||||||||| ||||||||| ||    
T  36604843 gttagtttttaatatcaaatatctaagatgaaccatattaaaaagtggcccaccatatgccttattaattttttttaattttaaccatttgattttttct 36604744  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaa 213  Q
    |||||||||||||||||||| |||| || | |||| || |||| ||||||    
T  36604743 ttaaaagaggaccattgaatcatgtggggtctattatactttactgtgaa 36604694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 43894223 - 43894383
Alignment:
Q  69 gtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaa 168  Q
    |||||||| | |||| |||| || |||||||||||||||| |||| ||| |||  || |||||||||||||||| ||||||| ||||||||| |||||||    
T  43894223 gtttttaacatcaaatgtctgaggtgaaccatatttaaagatggtccacaatatgccctattaaattttttaatcttaaccatttgattttttctttaaa 43894322  T
Q  169 agaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||| |  ||||||| |||||| | ||||||| |||| ||| ||||  ||||| ||||||    
T  43894323 agagggctgttgaattttgtagggtctattgtactttagtgtcaaccactaacatctaata 43894383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 52980150 - 52980272
Alignment:
Q  117 ccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacct 216  Q
    ||||| ||| |||||||||||| ||||||||||  || |||||| |||||||||||||   ||| |||||||||  | |||||||||||||||| ||||     
T  52980150 ccatataccttattaaatttttaaattttaaccttttaattttttctttaaaagaggattgttggattatgtagagtctattgtattttattgtaaacca 52980249  T
Q  217 ataacacctaatatttttctcac 239  Q
      |||||||||||||||||||||    
T  52980250 ccaacacctaatatttttctcac 52980272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 38419019 - 38418915
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  ||| || |||| ||||||||||||| ||||||| |||||||  || || |||||||||| |||||||||| ||||||||| |||    
T  38419019 gttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccatatgccttactaaatttttttattttaaccatttgattttttctt 38418920  T
Q  165 taaaa 169  Q
    |||||    
T  38418919 taaaa 38418915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 35787910 - 35788081
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| | || ||| |||||||||||| ||||||||||  |||||||||||| ||||||||||  || | |||| | |    
T  35787910 gttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagactttattaaatttttaaattttaaccttttaaatttttcat 35788009  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttct 236  Q
    ||||||| ||   ||| || ||| ||| | ||||| |||||||||| || |   ||||||||||||||||||    
T  35788010 taaaagatgattgttggatcatgcagggtctattgcattttattgtaaatcaccaacacctaatatttttct 35788081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 36604646 - 36604586
Alignment:
Q  128 attaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaattatgt 188  Q
    ||||| ||||||||||||||||| ||||||||| | ||||||||||||| |||||| ||||    
T  36604646 attaatttttttaattttaaccatttgattttttcgttaaaagaggaccgttgaatcatgt 36604586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 50530633 - 50530700
Alignment:
Q  81 aaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaac 148  Q
    ||||||||||| |||||||  |||| |||| || ||||||||||| |||||||||||||| |||||||    
T  50530633 aaaagtctaaggtgaaccaactttataggtagtccaccatagaccttattaaattttttatttttaac 50530700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 6616212 - 6616103
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattt-ttcctt 164  Q
    ||||||||||| | |||| ||| ||| ||||| ||  |||||| | || ||| ||||||| |||||||||||| ||||||||||  ||||||| || |||    
T  6616212 ttagtttttaacatcaaatgtcaaaggtgaacaatgattaaagatagtccactatagaccttattaaatttttaaattttaaccttttgatttatttctt 6616113  T
Q  165 taaaagagga 174  Q
    ||||||||||    
T  6616112 taaaagagga 6616103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 7707751 - 7707827
Alignment:
Q  109 gtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaatta 185  Q
    ||||| ||||||||| | |||||| | ||||||||| ||||  ||||||||| ||||||||||| ||||||| ||||    
T  7707751 gtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttctttaaaagagaaccattggatta 7707827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 26393109 - 26393038
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgat 156  Q
    ||||||| |||||||   ||| ||||||| ||||||||||| || ||| ||||||||||||||||| |||||    
T  26393109 gtctaaggtgaaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgat 26393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 86917 - 86970
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcacc 118  Q
    |||||||||||| | |||| ||||||| |||||||| |||||||||||| ||||    
T  86917 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacc 86970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 1794574 - 1794614
Alignment:
Q  109 gtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  1794574 gtggtccaccatagaccttattaaattttttaatttaaacc 1794614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 38555278 - 38555194
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    |||||||||||||   ||| ||||||| |||||||  |||  |||||||  |||||||||  |||||||||||||||||| ||||    
T  38555278 gttagtttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaacc 38555194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 41021 - 41184
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||||||||||| | |||| ||||||| ||||||||||||||||||||| |||||||  || || |||||||||| |||||||||| |||||||||  |    
T  41021 tgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaatttttttattttaaccatttgatttttttt 41120  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaa 227  Q
    ||||||||  ||| |||||| ||||||||| ||||||| |||| ||||||||  ||||||||||    
T  41121 ttaaaagataaccgttgaatcatgtaggatttattgtactttactgtgaaccactaacacctaa 41184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 14109073 - 14108885
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||||  || |||||| |||    
T  14109073 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaattttaaccttttaattttttctt 14108974  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcattttc 252  Q
    ||||||||||   ||| || ||||||||| |||| ||||||||||| |||    |||||  ||||||||||||| ||||||||||||||    
T  14108973 taaaagaggattgttggatcatgtaggatctattatattttattgtaaacaaccaacactaaatatttttctcacctttcttcattttc 14108885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 14419030 - 14418842
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| ||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||| ||||||||||  || |||||| |||    
T  14419030 gttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaattttaaccttttaattttttctt 14418931  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcattttc 252  Q
    ||||||||||   ||| || ||||||||| |||| ||||||||||| |||    |||||  ||||||||||||| ||||||||||||||    
T  14418930 taaaagaggattgttggatcatgtaggatctattatattttattgtaaacaaccaacactaaatatttttctcacctttcttcattttc 14418842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 4167586 - 4167739
Alignment:
Q  86 tctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctttaaaagaggaccattgaatta 185  Q
    |||||| |||||||| |||||||||||| ||||||||| | |||||||||||| ||||| ||||  ||||||||| ||||||||||||    ||| || |    
T  4167586 tctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcaaccttttgattttttctttaaaagaggtttgttggatga 4167685  T
Q  186 tgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcac 239  Q
    |||||| | | |||||||||||||| ||||    ||||||||||||||||||||    
T  4167686 tgtagggtctgttgtattttattgtaaaccaccgacacctaatatttttctcac 4167739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 18801328 - 18801505
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||| ||||||| ||||||  |||||| |||||||||||| |||||| | |||||| |||| || ||||   ||||||| |||||  || ||||||  |    
T  18801328 tgttaatttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttaattttttgt 18801427  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactt 241  Q
    |||||||||||   ||| || ||||||  | |||||||||||||||||  ||||||||||||||||||||||||||||    
T  18801428 ttaaaagaggattgttggatcatgtagagtctattgtattttattgtgtgcctataacacctaatatttttctcactt 18801505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 24495053 - 24494887
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttga--tttttcc 162  Q
    |||||||||||| | |||| ||||||  ||||||||||||||| ||||| |||||||  || |||||| ||||||||||||||||| ||||  |||||||    
T  24495053 gttagtttttaacatcaaatgtctaaagtgaaccatatttaaaagtggtccaccatatgccttattaatttttttaattttaaccatttgatttttttcc 24494954  T
Q  163 tttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    |||||||||  ||| |||||| |||| |  | ||||||| |||| ||||||||  | ||||||||||    
T  24494953 tttaaaagataaccgttgaatcatgtggcgtctattgtactttactgtgaaccactcacacctaata 24494887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 19848837 - 19848660
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcct 163  Q
    ||||| ||||||| ||||||  |||||| |||||||||||| |||||| | |||||| |||| || ||||   ||||||| |||||  |||||||||  |    
T  19848837 tgttaatttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttgattttttgt 19848738  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactt 241  Q
    |||||||||||   ||| || ||||||  | |||||||||||| ||||  ||||| ||||||||||||||||||||||    
T  19848737 ttaaaagaggattgttggatcatgtagagtctattgtattttactgtgtgcctatgacacctaatatttttctcactt 19848660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 38406132 - 38406240
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||| ||||||| | |||| ||||||| |||||||||||||||||| || || |||||||| |||||||||||| ||||| ||||  || ||||||  ||    
T  38406132 gttaatttttaacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagaccttattaaatttttaaatttcaaccttttaattttttgtt 38406230  T
Q  165 taaaagagga 174  Q
    ||||||||||    
T  38406231 taaaagagga 38406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 10256253 - 10256320
Alignment:
Q  81 aaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaac 148  Q
    ||||||||||| |||||||  |||| |||| || ||||||||||| |||||||| ||||| |||||||    
T  10256253 aaaagtctaaggtgaaccaactttataggtagtccaccatagaccttattaaatcttttatttttaac 10256320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 13205 - 13042
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttccttt 165  Q
    |||| |||||| | |||| ||||||| |||||||||||||||| |||| ||||||| ||| || |||| |||||||| ||||||| ||||||||| ||||    
T  13205 ttaggttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccatataccctactaaaatttttaatcttaaccatttgattttttcttt 13106  T
Q  166 aaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaata 229  Q
    ||||||||||  ||||||| |||||| | ||||||| |||||||| ||||  ||||| ||||||    
T  13105 aaaagaggactgttgaattttgtagggtctattgtactttattgtcaaccactaacatctaata 13042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 207800 - 207682
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| | |||| |||| || |||||||| |||||||||||| |||||||  || || ||||||||||||||||||||| ||||||||| |||    
T  207800 gttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaaccatttgattttttctt 207701  T
Q  165 taaaagaggaccattgaat 183  Q
    ||||| | |||||||||||    
T  207700 taaaacaagaccattgaat 207682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 215
Target Start/End: Complemental strand, 18139488 - 18139338
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc-agttgatttttcctt 164  Q
    ||||||||||| | |||| ||||||| |||||||| ||||||| || | ||||||||||  |||||||||||| ||||||||||   ||||||||| |||    
T  18139488 ttagtttttaacatcaaatgtctaaggtgaaccatgtttaaagatgatccaccatagacattattaaatttttaaattttaacctttttgattttttctt 18139389  T
Q  165 taaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacc 215  Q
    ||||||||||   ||| || ||||||| | |||||||||||| ||||||||    
T  18139388 taaaagaggattgttggatcatgtagggtctattgtattttactgtgaacc 18139338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 34084154 - 34084046
Alignment:
Q  147 accagttgatttttcctttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctcactttcttc 246  Q
    |||| ||||||||| ||||||| ||||||| |||||||||||||| | ||||||| |||| ||||||||  |||||||||||| |||| ||| |||||||    
T  34084154 accatttgattttttctttaaatgaggaccgttgaattatgtagggtctattgtactttactgtgaaccactaacacctaatacttttatcattttcttc 34084055  T
Q  247 attttcatc 255  Q
    || ||||||    
T  34084054 atcttcatc 34084046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 13507174 - 13507125
Alignment:
Q  64 tgttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggt 113  Q
    ||||||||||||| | |||| || |||| |||||||||||||||||||||    
T  13507174 tgttagtttttaacatcaaatgtttaaggtgaaccatatttaaaggtggt 13507125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 33802019 - 33801835
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttga-tttttcct 163  Q
    |||||||||||| | ||||  |||||| |  |||||  || |||||||| ||||||| ||| |||||||||||| |||||||| |  |||| ||||| ||    
T  33802019 gttagtttttaacatcaaatatctaaggtagaccatgattcaaggtggtccaccatataccttattaaatttttaaattttaa-cttttgatttttttct 33801921  T
Q  164 ttaaaagaggaccattgaattatgtaggatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcat 248  Q
    |||||||||||   ||| || ||||||| | |||||| ||||||| | ||||   ||||| | |||||||| ||| ||||||||||    
T  33801920 ttaaaagaggattgttggatcatgtagggtctattgttttttattataaaccaccaacacttgatatttttttcacctttcttcat 33801835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 9480 - 9379
Alignment:
Q  65 gttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgatttttcctt 164  Q
    |||||||||||| |  |||| |||||| |||||||||||||||| ||||||||| |||| | ||||||||||| |||||||||||| ||||||||| |||    
T  9480 gttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaaccatttgattttttctt 9381  T
Q  165 ta 166  Q
    ||    
T  9380 ta 9379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 248
Target Start/End: Complemental strand, 56701 - 56516
Alignment:
Q  66 ttagtttttaatagcaaaagtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttga-tttttcctt 164  Q
    ||||||||||| | ||||  ||||||   ||| || ||||||| |||| ||||| ||||| |||||||||||| ||||||||||  |||| ||||| |||    
T  56701 ttagtttttaacatcaaatatctaagggaaactatgtttaaagatggtccaccaaagaccttattaaatttttaaattttaaccttttgatttttttctt 56602  T
Q  165 taaaagaggaccattgaattatgtag-gatgtattgtattttattgtgaacctataacacctaatatttttctca-ctttcttcat 248  Q
    ||||||| ||   ||| || | |||| | | |||||||||||||||| ||||   |||||||||||||||||||| ||||||||||    
T  56601 taaaagatgattgttggatcacgtagtgttctattgtattttattgtaaaccaccaacacctaatatttttctcacctttcttcat 56516  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 77161 - 77090
Alignment:
Q  85 gtctaagctgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgat 156  Q
    ||||||| ||||||||||||||||||||| |||||| |||| ||| |  |  |||||||||||||| |||||    
T  77161 gtctaaggtgaaccatatttaaaggtggtccaccattgaccttataagttcatttaattttaaccatttgat 77090  T

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Target: scaffold2071 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 636 - 596
Alignment:
Q  109 gtggttcaccatagaccgtattaaattttttaattttaacc 149  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  636 gtggtccaccatagaccttattaaattttttaatttaaacc 596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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