View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_62 (Length: 368)
Name: NF11835_high_62
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 52758323 - 52758673
Alignment:
| Q |
1 |
tgacttttatgcctctgaggaatgaaggtaataaaagttagaatcggggtttaatgacaacaaataagaacaaatttaaaataatagcttagagtatact |
100 |
Q |
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| T |
52758323 |
tgacttttatgcctctgaggaatgaaggtaataaaagttagaatcggggtttaatgacaacaaataagaacaaatttaaaataatagcttagagtatact |
52758422 |
T |
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| Q |
101 |
tcttgatgttgtttcttcaagagaaagggctttggtaataacatccatggtactgaaacgagtgccaacaatagtaatataacctaacaataatttaata |
200 |
Q |
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| T |
52758423 |
tcttgatgttgtttcttcaagagaaagggctttggtaataacatccatggtactgaaacgagtgccaacaatagtaatataacctaacaataatttaata |
52758522 |
T |
|
| Q |
201 |
gtaggaaatttagatgtggcgtatatttagtatcactaagcaattgtgtatctaaataaaatatgaaatttcttacttgtaagaacttttggccaacaaa |
300 |
Q |
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| T |
52758523 |
gtaggaaatttagatgtggcgtatatttagtatcactaagcaactgtgtatctaaataaaatatgaaatttcttacttgtaataacttttggccaacaaa |
52758622 |
T |
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| Q |
301 |
gagctggttttcacccaaatcatctgttggacttagaaacatgtatatcat |
351 |
Q |
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| T |
52758623 |
gagctggttttcacccaaatcatctgttggacttagaaacatgtatatcat |
52758673 |
T |
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