View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_66 (Length: 353)
Name: NF11835_high_66
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 345
Target Start/End: Complemental strand, 33646179 - 33645875
Alignment:
| Q |
24 |
atatgaagcacatatacagacacaaacatcggacacatcacgcacgacacatgttgagcacttggaaacgcctaatctgaggagcgtccatgcttcatag |
123 |
Q |
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| T |
33646179 |
atatgaagcacatatacaaacacaaacatcggacacatcacgcacgacacatgttgagcacctggaaatgcctaatctgaggaacgtccatgcttcatag |
33646080 |
T |
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| Q |
124 |
acacacacgtctaatagaagctaagatttttagcttcataaatttacggcataaaggtgctgcaaacgcgcgcctatggttgtaaaagctaaaccaaaca |
223 |
Q |
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| T |
33646079 |
acacac--gtctaatagaagctaagatttttagcttcataaatttacggcataaagg---------------cctatggttgtaaaagttaaaccaaaca |
33645997 |
T |
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| Q |
224 |
cgctatgagagtgtaaagtgtgtaatatcaacaattgttaaataaatcaaaagctgatattacatgcacgtgtgtagaacaactcatgagtgtgttttca |
323 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33645996 |
tgctatcagagtgtaaagtgtgtaatatcaaccattgttaaataaatcaaaagctgatattacatgcacgtgtgtagaacaactcatgagtgtgttttca |
33645897 |
T |
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| Q |
324 |
ttttctcactttactctctgct |
345 |
Q |
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|||||||||||||||||||||| |
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| T |
33645896 |
ttttctcactttactctctgct |
33645875 |
T |
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