View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_69 (Length: 344)
Name: NF11835_high_69
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 42 - 331
Target Start/End: Original strand, 38003500 - 38003789
Alignment:
| Q |
42 |
tggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
141 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003500 |
tggaattatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
38003599 |
T |
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| Q |
142 |
aacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtg |
241 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003600 |
aacttaaggatgagaagaaggcaaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatagtg |
38003699 |
T |
|
| Q |
242 |
atgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatct |
331 |
Q |
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| T |
38003700 |
atattagattagattatttatgtaaagtttgtaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatct |
38003789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 40 - 340
Target Start/End: Original strand, 38031749 - 38032043
Alignment:
| Q |
40 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaa |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38031749 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaa |
38031848 |
T |
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| Q |
140 |
caaacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttgtacatag |
239 |
Q |
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| T |
38031849 |
caaacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgattaacttatacatag |
38031948 |
T |
|
| Q |
240 |
tgatgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttcacatatctctgcttct |
339 |
Q |
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||||||||||||| |||||||||||||| |||| ||| | |||| | | ||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
38031949 |
tgatgttagattatattaattatgtaaattttgtaatcttaaacggc------aatattattcaatgaggaaagtttattcttcacatatctatgtttct |
38032042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 42 - 324
Target Start/End: Original strand, 38025011 - 38025305
Alignment:
| Q |
42 |
tggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaaca |
141 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
38025011 |
tggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgtctcaagcaaagaatttctcttcttcttcatttcttgctacca |
38025110 |
T |
|
| Q |
142 |
aacttaaggatgagaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatttg--------- |
232 |
Q |
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|| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38025111 |
aatttaaggatgagaagaagtccaaacaagcagaggagtctctaaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataa |
38025210 |
T |
|
| Q |
233 |
---------tacatagtgatgttagattagattaattatgtaaagtttgcaatatcaaactacagtactattattattcaatgaggaaagtttattcttc |
323 |
Q |
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||||||||||||||||||||||| || ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
38025211 |
ttattatattacatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggc------aatattattcaatgaggaaagtttattcttc |
38025304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 38028451 - 38028501
Alignment:
| Q |
172 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
222 |
Q |
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||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38028451 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38028501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 38043091 - 38043141
Alignment:
| Q |
172 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
222 |
Q |
| |
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||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38043091 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38043141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 38067438 - 38067488
Alignment:
| Q |
172 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
222 |
Q |
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||||||| |||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38067438 |
cagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaatt |
38067488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 2912477 - 2912525
Alignment:
| Q |
177 |
gagtctttgaggactgtcatgtacttgagctgttggggtcccaattgat |
225 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
2912477 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
2912525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 38046599 - 38046647
Alignment:
| Q |
172 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
220 |
Q |
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||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
38046599 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa |
38046647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 38022056 - 38022113
Alignment:
| Q |
163 |
ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
220 |
Q |
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|||| ||| ||||||| |||||||| |||||||||| |||||| || ||||||||||| |
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| T |
38022056 |
ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
38022113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 38045095 - 38045148
Alignment:
| Q |
174 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgatta |
227 |
Q |
| |
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||||| |||||||||| |||||||||||||| || ||||||||||||| |||| |
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| T |
38045095 |
gaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaattaatta |
38045148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 38069110 - 38069155
Alignment:
| Q |
172 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcc |
217 |
Q |
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||||||| |||||||| || ||||||||||| |||||||||||||| |
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| T |
38069110 |
cagaggaatctttgagaacagtcatgtacttaagctgttggggtcc |
38069155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 16005483 - 16005531
Alignment:
| Q |
174 |
gaggagtctttgaggactgtcatgtacttgagctgttggggtcccaatt |
222 |
Q |
| |
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|||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
16005483 |
gaggagtcattgaggacggtcatgtacttaagctgttggggtcccaatt |
16005531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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