View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_78 (Length: 313)

Name: NF11835_high_78
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_78
NF11835_high_78
[»] chr4 (3 HSPs)
chr4 (1-300)||(52185306-52185605)
chr4 (1-202)||(24489053-24489253)
chr4 (114-148)||(38375327-38375361)
[»] chr5 (2 HSPs)
chr5 (1-203)||(31746484-31746683)
chr5 (1-109)||(31763877-31763983)
[»] chr7 (3 HSPs)
chr7 (4-148)||(33293569-33293711)
chr7 (53-131)||(18891761-18891839)
chr7 (53-128)||(7606553-7606628)
[»] scaffold0457 (1 HSPs)
scaffold0457 (54-148)||(2250-2344)
[»] chr1 (1 HSPs)
chr1 (53-107)||(35793992-35794046)
[»] chr8 (1 HSPs)
chr8 (1-125)||(23038881-23039003)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 52185306 - 52185605
Alignment:
Q  1 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52185306 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 52185405  T
Q  101 atgattcttcgagtcatatttaatacatgaataataagagatatatgttggttgtgtggtgcatatacttggtgatgttcttagtgattaagatgcatga 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52185406 atgattcttcgagtcatatttaatacataaataataagagatatatgttggttgtgtggtgcatatacttggtgatgttcttagtgattaagatgcatga 52185505  T
Q  201 ctccgtgagtcatatttatttttcggtgttactttgttttatggtgttgtttatcgaaagttatatttaatacatgagaaataaaaagaaacagtagcct 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52185506 ctccgagagtcatatttatttttcggtgttactttgttttatggtgttgtttatcgaaagttatatttaatacatgagaaataaaaagaaacaatagcct 52185605  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24489053 - 24489253
Alignment:
Q  1 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 100  Q
    |||||||||| |||||||||| |||||||||||| ||||| | ||| | |  | ||||||||||| |||  || ||| ||||| |||||||||| |||||    
T  24489053 tagataataggtgcataatacctaaatataatagatgtta-gcaatttacacttactttgtatttataacctatataatattctttctcacataacatgc 24489151  T
Q  101 atgattcttcgagtcatatttaatacatgaataataagagatatatgttggttgtgtggtgcatatacttggtgatgttcttagtgattaagatgcatga 200  Q
    || | |||| ||||| ||||||||||||||  ||||| | | |||| |||||||||||  |||| || |||||||||||||| || ||||| ||||||||    
T  24489152 attactcttagagtcttatttaatacatgatgaataataaagatatcttggttgtgtgaggcatgtagttggtgatgttcttggtaattaatatgcatga 24489251  T
Q  201 ct 202  Q
    ||    
T  24489252 ct 24489253  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 38375327 - 38375361
Alignment:
Q  114 tcatatttaatacatgaataataagagatatatgt 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  38375327 tcatatttaatacatgaataacaagagatatatgt 38375361  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31746683 - 31746484
Alignment:
Q  1 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 100  Q
    ||||||||||||  ||||||  ||| |||||||| ||  ||| ||| | |||||||||||||||| ||| ||| ||| |||||||||||||||||||||     
T  31746683 tagataatagatttataatatttaagtataatagctg--atggaatttactttcactttgtatttctaacatatataatattcattctcacatatcatgt 31746586  T
Q  101 atgattcttcgagtcatatttaatacatgaataataagagatatatgttggttgtgtggtgcatatacttggtgatgttcttagtgattaagatgcatga 200  Q
    |||| | ||  | ||||||||||||||| || ||| ||||| |||||||| |||||||||||||||| ||| |||| ||||| ||| |||| ||| ||||    
T  31746585 atgacttttaaaatcatatttaatacataaagaatgagagacatatgttgattgtgtggtgcatatagttgatgatattcttggtg-ttaacatgtatga 31746487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31763983 - 31763877
Alignment:
Q  1 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 100  Q
    ||||||||||||  |||||| |||| ||||||||  |  ||| ||| | |||| | ||||||||| ||| ||| ||| ||||||||||||||||||||||    
T  31763983 tagataatagatttataatatataagtataatagcag--atggaatttacttttattttgtatttctaacatatataatattcattctcacatatcatgc 31763886  T
Q  101 atgattctt 109  Q
    |||| ||||    
T  31763885 atgactctt 31763877  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 33293569 - 33293711
Alignment:
Q  4 ataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgcatg 103  Q
    |||||| ||||||| |||||||||||||| || | ||  |||| | |  ||||||||||||||||| ||| ||| |||| ||||||||||||||| ||||    
T  33293569 ataataaatgcatattacataaatataatgggggcta--aaatttacaatcactttgtatttttaacatatataatatttattctcacatatcatacatg 33293666  T
Q  104 attcttcg-agtcatatttaatacatgaataataagagatatatgt 148  Q
    |  ||  | || ||||||||||||||||| ||||||| ||||||||    
T  33293667 a-actaagtagacatatttaatacatgaaaaataagaaatatatgt 33293711  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 18891761 - 18891839
Alignment:
Q  53 tcactttgtatttttaagatacatattattcattctcacatatcatgcatgattcttcgagtcatatttaatacatgaa 131  Q
    ||||||||||||| ||| ||| ||| |||||||||||||||  |||| |||| ||   |||||||||||||||||||||    
T  18891761 tcactttgtatttgtaatatatataatattcattctcacattgcatgtatgactcaaagagtcatatttaatacatgaa 18891839  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 7606553 - 7606628
Alignment:
Q  53 tcactttgtatttttaagatacatattattcattctcacatatcatgcatgattcttcgagtcatatttaatacat 128  Q
    ||||||||||||||||| ||| ||| |||| ||||||| ||  ||||||||| | |  ||||||||||||||||||    
T  7606553 tcactttgtatttttaacatatataatatttattctcatatgacatgcatgactataagagtcatatttaatacat 7606628  T

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Target: scaffold0457 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 2250 - 2344
Alignment:
Q  54 cactttgtatttttaagatacatattattcattctcacatatcatgcatgattcttcgagtcatatttaatacatgaataataagagatatatgt 148  Q
    |||||||||||||||| ||| ||| |||| ||||||||||  ||||||||  ||   |||||||| |||||| ||||| ||||||| | ||||||    
T  2250 cactttgtatttttaacatatataatatttattctcacattacatgcatggctcaaagagtcatagttaatatatgaagaataagatagatatgt 2344  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 35794046 - 35793992
Alignment:
Q  53 tcactttgtatttttaagatacatattattcattctcacatatcatgcatgattc 107  Q
    ||||||||||||||||| ||| ||| |||| ||||||||||  ||||||||||||    
T  35794046 tcactttgtatttttaacatatataatatttattctcacatgacatgcatgattc 35793992  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 23039003 - 23038881
Alignment:
Q  1 tagataatagatgcataatacataaatataataggtgttatgaaatatgctttcactttgtatttttaagatacatattattcattctcacatatcatgc 100  Q
    ||||||||||||| |||||||||| || ||||||| ||||  |||| | |  |||| |||||||| ||| |||  || |||||||||||||||| ||||     
T  23039003 tagataatagatgtataatacatatatgtaataggagtta--aaatttacaatcacgttgtatttctaacatatgtaatattcattctcacataacatgt 23038906  T
Q  101 atgattcttcgagtcatatttaata 125  Q
    |||| ||    ||||||||||||||    
T  23038905 atgactcaaatagtcatatttaata 23038881  T

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