View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_79 (Length: 308)
Name: NF11835_high_79
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_79 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 44855200 - 44855396
Alignment:
| Q |
18 |
gttctcgcaagcatcacttaattggtaggaaattacacattatatatgttgaggttagaactcgaatccggattattcatttattcctttaaaaggatgt |
117 |
Q |
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| T |
44855200 |
gttctcgcaagcatcacttaattggtaggaaattacacattatatatgttgaggttagaactcgaatccggattatccatttattcctttaaaaggatgt |
44855299 |
T |
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| Q |
118 |
gtaattctacatgataaaaagaaaatcacattattttgaagagtnnnnnnnnnnnnnncatttgatttttcttcatgcggtttataagttgaatgca |
214 |
Q |
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| T |
44855300 |
gtaattctacatgataaaaagaaaatcacattattttgaagagtaaaaaaaaaaaaaacatttgatttttcttcatgcggtttataagttgaatgca |
44855396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 44855426 - 44855516
Alignment:
| Q |
212 |
gcagatgaagaatttgaagagtttaatgaatcctctttccgactctagttgcattattcaacatgggacgaagatgattggggttcattga |
302 |
Q |
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| T |
44855426 |
gcagatgaagaatttgaagagtttaatgaatcctctttccgactctagttgcattattcaacatgggacgaagatgattggggttcattga |
44855516 |
T |
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