View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_high_87 (Length: 283)

Name: NF11835_high_87
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_high_87
NF11835_high_87
[»] chr5 (1 HSPs)
chr5 (1-283)||(6177470-6177752)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6177752 - 6177470
Alignment:
Q  1 ccttcatgaaagtacataggatgcaaactcaatccatttctcaatgacagcatctgaaatatcatcataagggtcacatactgttcagtaactaagctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177752 ccttcatgaaagtacataggatgcaaactcaatccatttctcaatgacagcatctgaaatatcatcataagggtcacatactgttcagtaactaagctac 6177653  T
Q  101 cttcaatagcaaattcaatcgatcaaaattagattcattctctataataacaacaatattccaatttgcttgattgaaaattgacaaacatttcttcatt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177652 cttcaatagcaaattcattcgatcaaaattagattcattctctataataacaacaatattccaatttgcttgattgaaaattgacaaacatttcttcatt 6177553  T
Q  201 ttttattccacaaattatcctatttagttattaagcattaaagacatcaacaaaactcaatatacatttacagtttcaccagc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6177552 ttttattccacaaattatcctatttagttattaagcattaaagacatcaacaaaactcaatatacatttacagtttcaacagc 6177470  T

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