View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_93 (Length: 270)
Name: NF11835_high_93
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_93 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12121378 - 12121144
Alignment:
| Q |
1 |
tgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgatagatatcc |
100 |
Q |
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| T |
12121378 |
tgatttagtagtttttgttgatgtgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgatagatatcc |
12121279 |
T |
|
| Q |
101 |
ttacctttagtctgcttcatctatatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaaactaaccttcaatgctattaattaatcaagg |
200 |
Q |
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| T |
12121278 |
ttacctttagtctgcttcatctttatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaaactaaccttcaatgctattaattaatcaagg |
12121179 |
T |
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| Q |
201 |
attcaagattctttatattgtcattccatttcatg |
235 |
Q |
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| T |
12121178 |
attcaagattctttatattgtcattccatttcatg |
12121144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 14661916 - 14662038
Alignment:
| Q |
97 |
atccttacctttagtctgcttcatctatatgtgttaccattcatttatctgcgtttctctgtgcacttgtgaa---actaaccttcaatgctattaatta |
193 |
Q |
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| T |
14661916 |
atccttacctttagtctgcttcatctat--gtgttatgattaatttatctgcaattctgtgtgc--tgatgaagttattaacattcaatgttattcatta |
14662011 |
T |
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| Q |
194 |
atcaaggattcaagattctttatattg |
220 |
Q |
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| T |
14662012 |
atcaaggattcaagattatttatattg |
14662038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 14690968 - 14690895
Alignment:
| Q |
24 |
tgcacaattttcatttcctcattatcacaagagttactgcaactattctgttgcaagtaaagttttgatagata |
97 |
Q |
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|||||||||||||||| ||||| |||| |||||||||||||||| ||| || ||||| ||||| | ||||||| |
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| T |
14690968 |
tgcacaattttcattttctcatgatcataagagttactgcaactgttccatttcaagtcaagttcttatagata |
14690895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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